Hb_004228_010

Information

Type -
Description -
Location Contig4228: 9251-30411
Sequence    

Annotation

kegg
ID rcu:RCOM_0990510
description hypothetical protein
nr
ID XP_012092157.1
description PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
swissprot
ID Q55DM1
description BEACH domain-containing protein lvsA OS=Dictyostelium discoideum GN=lvsA PE=3 SV=2
trembl
ID B9S4P2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0990510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41834: 9344-9893 , PASA_asmbl_41835: 9930-12496 , PASA_asmbl_41836: 13533-17602 , PASA_asmbl_41837: 17616-19039 , PASA_asmbl_41838: 19068-19266 , PASA_asmbl_41839: 19331-20423 , PASA_asmbl_41840: 20495-21061 , PASA_asmbl_41842: 21965-22623 , PASA_asmbl_41843: 22857-24521 , PASA_asmbl_41844: 24545-25640 , PASA_asmbl_41845: 25804-28827 , PASA_asmbl_41846: 29159-29879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_010 0.0 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
2 Hb_004306_080 0.0615632465 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
3 Hb_000796_040 0.0664076096 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_014267_010 0.0665595995 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
5 Hb_001472_090 0.0690172025 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_010417_050 0.0711226961 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
7 Hb_002493_020 0.0741046518 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
8 Hb_001199_100 0.0762422034 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
9 Hb_000853_210 0.077184882 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
10 Hb_003044_020 0.0785071448 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
11 Hb_007904_030 0.0809195162 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
12 Hb_000183_020 0.0833889499 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
13 Hb_003988_010 0.0839082381 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
14 Hb_000574_070 0.0857630305 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
15 Hb_000116_500 0.086129728 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
16 Hb_001329_140 0.0864794015 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
17 Hb_000201_110 0.086702879 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
18 Hb_000803_260 0.0876865016 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
19 Hb_002811_060 0.090013843 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
20 Hb_007062_020 0.091218537 - - gcn4-complementing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004228_010 Hb_004228_010 Hb_004306_080 Hb_004306_080 Hb_004228_010--Hb_004306_080 Hb_000796_040 Hb_000796_040 Hb_004228_010--Hb_000796_040 Hb_014267_010 Hb_014267_010 Hb_004228_010--Hb_014267_010 Hb_001472_090 Hb_001472_090 Hb_004228_010--Hb_001472_090 Hb_010417_050 Hb_010417_050 Hb_004228_010--Hb_010417_050 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_000785_040 Hb_000785_040 Hb_004306_080--Hb_000785_040 Hb_000116_500 Hb_000116_500 Hb_004306_080--Hb_000116_500 Hb_004102_140 Hb_004102_140 Hb_004306_080--Hb_004102_140 Hb_007062_020 Hb_007062_020 Hb_004306_080--Hb_007062_020 Hb_004306_080--Hb_002493_020 Hb_000853_210 Hb_000853_210 Hb_000796_040--Hb_000853_210 Hb_007416_160 Hb_007416_160 Hb_000796_040--Hb_007416_160 Hb_000009_600 Hb_000009_600 Hb_000796_040--Hb_000009_600 Hb_009503_030 Hb_009503_030 Hb_000796_040--Hb_009503_030 Hb_000796_040--Hb_000116_500 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_014267_010--Hb_010417_050 Hb_000574_070 Hb_000574_070 Hb_001472_090--Hb_000574_070 Hb_000803_260 Hb_000803_260 Hb_001472_090--Hb_000803_260 Hb_001472_090--Hb_014267_010 Hb_000684_250 Hb_000684_250 Hb_001472_090--Hb_000684_250 Hb_000540_060 Hb_000540_060 Hb_001472_090--Hb_000540_060 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040 Hb_001496_070 Hb_001496_070 Hb_002493_020--Hb_001496_070 Hb_005679_050 Hb_005679_050 Hb_002493_020--Hb_005679_050 Hb_002493_020--Hb_004102_140 Hb_172632_080 Hb_172632_080 Hb_002493_020--Hb_172632_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5525 13.707 5.83684 11.2846 16.8293 21.8084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.02891 6.7932 15.6976 10.2133 14.2376

CAGE analysis