Hb_000853_210

Information

Type -
Description -
Location Contig853: 171914-175023
Sequence    

Annotation

kegg
ID rcu:RCOM_1180020
description hypothetical protein
nr
ID XP_012082831.1
description PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID A0A067JZM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13979 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60486: 173223-173873 , PASA_asmbl_60487: 173955-175007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_210 0.0 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
2 Hb_000796_040 0.0577418864 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000009_600 0.0759189229 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
4 Hb_034432_030 0.0764196194 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
5 Hb_004228_010 0.077184882 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
6 Hb_007904_030 0.0790110997 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
7 Hb_004306_080 0.0800078173 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
8 Hb_009503_030 0.0806792859 - - protein dimerization, putative [Ricinus communis]
9 Hb_000429_220 0.0846911366 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
10 Hb_003884_030 0.0849560196 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
11 Hb_001379_110 0.0851552058 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
12 Hb_003912_030 0.0854508767 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
13 Hb_000037_190 0.0859925073 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
14 Hb_027380_140 0.0866690583 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
15 Hb_000960_100 0.0876106315 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
16 Hb_001498_010 0.0902062682 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
17 Hb_002233_100 0.0914574028 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
18 Hb_000116_500 0.0918904752 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
19 Hb_000671_070 0.0925567903 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
20 Hb_001047_220 0.0934282449 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]

Gene co-expression network

sample Hb_000853_210 Hb_000853_210 Hb_000796_040 Hb_000796_040 Hb_000853_210--Hb_000796_040 Hb_000009_600 Hb_000009_600 Hb_000853_210--Hb_000009_600 Hb_034432_030 Hb_034432_030 Hb_000853_210--Hb_034432_030 Hb_004228_010 Hb_004228_010 Hb_000853_210--Hb_004228_010 Hb_007904_030 Hb_007904_030 Hb_000853_210--Hb_007904_030 Hb_004306_080 Hb_004306_080 Hb_000853_210--Hb_004306_080 Hb_000796_040--Hb_004228_010 Hb_007416_160 Hb_007416_160 Hb_000796_040--Hb_007416_160 Hb_000796_040--Hb_000009_600 Hb_009503_030 Hb_009503_030 Hb_000796_040--Hb_009503_030 Hb_000116_500 Hb_000116_500 Hb_000796_040--Hb_000116_500 Hb_009851_070 Hb_009851_070 Hb_000009_600--Hb_009851_070 Hb_002234_170 Hb_002234_170 Hb_000009_600--Hb_002234_170 Hb_000009_600--Hb_009503_030 Hb_002235_300 Hb_002235_300 Hb_000009_600--Hb_002235_300 Hb_001379_110 Hb_001379_110 Hb_034432_030--Hb_001379_110 Hb_001047_220 Hb_001047_220 Hb_034432_030--Hb_001047_220 Hb_000544_010 Hb_000544_010 Hb_034432_030--Hb_000544_010 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_000975_040 Hb_000975_040 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_004228_010--Hb_004306_080 Hb_014267_010 Hb_014267_010 Hb_004228_010--Hb_014267_010 Hb_001472_090 Hb_001472_090 Hb_004228_010--Hb_001472_090 Hb_010417_050 Hb_010417_050 Hb_004228_010--Hb_010417_050 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_000684_250 Hb_000684_250 Hb_007904_030--Hb_000684_250 Hb_007904_030--Hb_004228_010 Hb_000878_180 Hb_000878_180 Hb_007904_030--Hb_000878_180 Hb_004676_010 Hb_004676_010 Hb_007904_030--Hb_004676_010 Hb_002025_060 Hb_002025_060 Hb_007904_030--Hb_002025_060 Hb_000785_040 Hb_000785_040 Hb_004306_080--Hb_000785_040 Hb_004306_080--Hb_000116_500 Hb_004102_140 Hb_004102_140 Hb_004306_080--Hb_004102_140 Hb_007062_020 Hb_007062_020 Hb_004306_080--Hb_007062_020 Hb_004306_080--Hb_002493_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54007 5.34833 3.2342 4.7027 7.87163 6.04027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53616 2.34781 5.61678 3.49752 6.23096

CAGE analysis