Hb_007416_160

Information

Type -
Description -
Location Contig7416: 99779-111743
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000014mg
description hypothetical protein
nr
ID XP_010273595.1
description PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A0B0PGK0
description Keratin, type I cytoskeletal 27 OS=Gossypium arboreum GN=F383_03564 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56426: 99368-102126 , PASA_asmbl_56427: 102144-103027 , PASA_asmbl_56428: 105917-106570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_160 0.0 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
2 Hb_000796_040 0.0699187959 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000031_170 0.0754112755 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
4 Hb_012799_030 0.0832852199 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
5 Hb_001205_230 0.0862453612 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
6 Hb_000034_040 0.0876283333 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
7 Hb_003440_050 0.0912112114 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
8 Hb_003544_180 0.0927797549 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
9 Hb_009486_060 0.0948916381 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
10 Hb_000803_260 0.0973775474 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
11 Hb_006649_050 0.0978093354 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
12 Hb_000853_210 0.0981639342 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
13 Hb_000318_390 0.0988019065 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
14 Hb_004225_050 0.0999939135 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
15 Hb_000041_090 0.1016508814 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
16 Hb_000009_600 0.1028680845 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
17 Hb_172632_080 0.1031812082 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
18 Hb_002233_100 0.10452705 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
19 Hb_004228_010 0.1048945466 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
20 Hb_001213_050 0.105145568 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_160 Hb_007416_160 Hb_000796_040 Hb_000796_040 Hb_007416_160--Hb_000796_040 Hb_000031_170 Hb_000031_170 Hb_007416_160--Hb_000031_170 Hb_012799_030 Hb_012799_030 Hb_007416_160--Hb_012799_030 Hb_001205_230 Hb_001205_230 Hb_007416_160--Hb_001205_230 Hb_000034_040 Hb_000034_040 Hb_007416_160--Hb_000034_040 Hb_003440_050 Hb_003440_050 Hb_007416_160--Hb_003440_050 Hb_000853_210 Hb_000853_210 Hb_000796_040--Hb_000853_210 Hb_004228_010 Hb_004228_010 Hb_000796_040--Hb_004228_010 Hb_000009_600 Hb_000009_600 Hb_000796_040--Hb_000009_600 Hb_009503_030 Hb_009503_030 Hb_000796_040--Hb_009503_030 Hb_000116_500 Hb_000116_500 Hb_000796_040--Hb_000116_500 Hb_005486_030 Hb_005486_030 Hb_000031_170--Hb_005486_030 Hb_000031_170--Hb_001205_230 Hb_000046_190 Hb_000046_190 Hb_000031_170--Hb_000046_190 Hb_000574_400 Hb_000574_400 Hb_000031_170--Hb_000574_400 Hb_000318_390 Hb_000318_390 Hb_000031_170--Hb_000318_390 Hb_012799_030--Hb_000034_040 Hb_000201_110 Hb_000201_110 Hb_012799_030--Hb_000201_110 Hb_000193_310 Hb_000193_310 Hb_012799_030--Hb_000193_310 Hb_006711_100 Hb_006711_100 Hb_012799_030--Hb_006711_100 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_027346_010 Hb_027346_010 Hb_001205_230--Hb_027346_010 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_006915_070 Hb_006915_070 Hb_000034_040--Hb_006915_070 Hb_015884_030 Hb_015884_030 Hb_000034_040--Hb_015884_030 Hb_003938_080 Hb_003938_080 Hb_000034_040--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000034_040--Hb_009411_010 Hb_002681_070 Hb_002681_070 Hb_000034_040--Hb_002681_070 Hb_012656_030 Hb_012656_030 Hb_003440_050--Hb_012656_030 Hb_003440_050--Hb_000318_390 Hb_000174_220 Hb_000174_220 Hb_003440_050--Hb_000174_220 Hb_003440_050--Hb_000803_260 Hb_000041_090 Hb_000041_090 Hb_003440_050--Hb_000041_090 Hb_000139_090 Hb_000139_090 Hb_003440_050--Hb_000139_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62546 7.41958 2.34138 5.26105 9.7532 8.85787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61125 4.98505 8.94471 4.44236 11.5326

CAGE analysis