Hb_000201_110

Information

Type -
Description -
Location Contig201: 138401-140317
Sequence    

Annotation

kegg
ID vvi:100256969
description pentatricopeptide repeat-containing protein At2g02750
nr
ID KDP21219.1
description hypothetical protein JCGZ_21690 [Jatropha curcas]
swissprot
ID Q1PFA6
description Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2
trembl
ID A0A067JNZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20425: 139405-139968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_110 0.0 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
2 Hb_012799_030 0.0756897742 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
3 Hb_009548_020 0.0783911449 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_001329_140 0.0831451641 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
5 Hb_028912_050 0.0839008171 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
6 Hb_006649_050 0.0844830369 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
7 Hb_001675_180 0.0845761925 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
8 Hb_002311_040 0.0846579938 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
9 Hb_003168_110 0.0850149351 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
10 Hb_000009_560 0.0850209364 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
11 Hb_000803_260 0.085087233 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
12 Hb_016172_020 0.0852944838 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
13 Hb_172632_080 0.0861779213 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
14 Hb_000684_250 0.0862175644 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
15 Hb_004228_010 0.086702879 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
16 Hb_105105_020 0.0877226841 - - vacuolar protein sorting vps41, putative [Ricinus communis]
17 Hb_001199_100 0.0879354459 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
18 Hb_003488_030 0.0882806657 - - PREDICTED: protein CPR-5 [Jatropha curcas]
19 Hb_003029_110 0.0898882169 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
20 Hb_002942_100 0.0918250045 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000201_110 Hb_000201_110 Hb_012799_030 Hb_012799_030 Hb_000201_110--Hb_012799_030 Hb_009548_020 Hb_009548_020 Hb_000201_110--Hb_009548_020 Hb_001329_140 Hb_001329_140 Hb_000201_110--Hb_001329_140 Hb_028912_050 Hb_028912_050 Hb_000201_110--Hb_028912_050 Hb_006649_050 Hb_006649_050 Hb_000201_110--Hb_006649_050 Hb_001675_180 Hb_001675_180 Hb_000201_110--Hb_001675_180 Hb_000034_040 Hb_000034_040 Hb_012799_030--Hb_000034_040 Hb_000193_310 Hb_000193_310 Hb_012799_030--Hb_000193_310 Hb_007416_160 Hb_007416_160 Hb_012799_030--Hb_007416_160 Hb_006711_100 Hb_006711_100 Hb_012799_030--Hb_006711_100 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_000684_250 Hb_000684_250 Hb_001329_140--Hb_000684_250 Hb_003168_110 Hb_003168_110 Hb_001329_140--Hb_003168_110 Hb_001329_140--Hb_000803_260 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_000590_050 Hb_000590_050 Hb_001329_140--Hb_000590_050 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_009767_110 Hb_009767_110 Hb_006649_050--Hb_009767_110 Hb_000165_250 Hb_000165_250 Hb_006649_050--Hb_000165_250 Hb_002725_120 Hb_002725_120 Hb_006649_050--Hb_002725_120 Hb_006649_050--Hb_004225_050 Hb_001198_100 Hb_001198_100 Hb_006649_050--Hb_001198_100 Hb_000291_050 Hb_000291_050 Hb_006649_050--Hb_000291_050 Hb_044728_010 Hb_044728_010 Hb_001675_180--Hb_044728_010 Hb_001675_180--Hb_000072_220 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_001675_180--Hb_000165_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92518 2.07758 1.34624 1.59014 1.98379 3.78424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39579 1.69388 3.1026 1.53357 2.55372

CAGE analysis