Hb_006711_100

Information

Type -
Description -
Location Contig6711: 85233-94373
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16450g
description hypothetical protein
nr
ID XP_012075862.1
description PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9N5R9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s16450g PE=4 SV=1
Gene Ontology
ID GO:0009790
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53451: 87068-87705 , PASA_asmbl_53452: 87770-89074 , PASA_asmbl_53453: 89318-90280 , PASA_asmbl_53454: 90345-91397 , PASA_asmbl_53455: 91423-94354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_100 0.0 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
2 Hb_012799_030 0.0844260741 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
3 Hb_000707_050 0.0846634855 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
4 Hb_004225_050 0.0922598646 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
5 Hb_000388_090 0.0926279746 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
6 Hb_000883_060 0.0941119674 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
7 Hb_000352_190 0.0942035995 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
8 Hb_000193_310 0.0943622807 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
9 Hb_000366_040 0.0943919268 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
10 Hb_001671_010 0.0973574004 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
11 Hb_028912_050 0.0977543891 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
12 Hb_002725_120 0.0985522673 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
13 Hb_002660_010 0.0987213043 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
14 Hb_002063_020 0.0987820519 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
15 Hb_006915_030 0.1013025134 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
16 Hb_004156_050 0.1015230622 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
17 Hb_188063_020 0.1015247695 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002942_100 0.1015252914 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
19 Hb_006718_020 0.102313222 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
20 Hb_000010_340 0.1033204109 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006711_100 Hb_006711_100 Hb_012799_030 Hb_012799_030 Hb_006711_100--Hb_012799_030 Hb_000707_050 Hb_000707_050 Hb_006711_100--Hb_000707_050 Hb_004225_050 Hb_004225_050 Hb_006711_100--Hb_004225_050 Hb_000388_090 Hb_000388_090 Hb_006711_100--Hb_000388_090 Hb_000883_060 Hb_000883_060 Hb_006711_100--Hb_000883_060 Hb_000352_190 Hb_000352_190 Hb_006711_100--Hb_000352_190 Hb_000034_040 Hb_000034_040 Hb_012799_030--Hb_000034_040 Hb_000201_110 Hb_000201_110 Hb_012799_030--Hb_000201_110 Hb_000193_310 Hb_000193_310 Hb_012799_030--Hb_000193_310 Hb_007416_160 Hb_007416_160 Hb_012799_030--Hb_007416_160 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_000739_310 Hb_000739_310 Hb_000707_050--Hb_000739_310 Hb_086639_040 Hb_086639_040 Hb_000707_050--Hb_086639_040 Hb_000574_390 Hb_000574_390 Hb_000707_050--Hb_000574_390 Hb_000832_020 Hb_000832_020 Hb_000707_050--Hb_000832_020 Hb_013405_030 Hb_013405_030 Hb_000707_050--Hb_013405_030 Hb_028912_050 Hb_028912_050 Hb_004225_050--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_004225_050--Hb_188063_020 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_000028_480 Hb_000028_480 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_002063_020 Hb_002063_020 Hb_000388_090--Hb_002063_020 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_000010_340 Hb_000010_340 Hb_000883_060--Hb_000010_340 Hb_001341_070 Hb_001341_070 Hb_000883_060--Hb_001341_070 Hb_001671_010 Hb_001671_010 Hb_000883_060--Hb_001671_010 Hb_015941_020 Hb_015941_020 Hb_000883_060--Hb_015941_020 Hb_000913_020 Hb_000913_020 Hb_000883_060--Hb_000913_020 Hb_000352_190--Hb_028912_050 Hb_000366_040 Hb_000366_040 Hb_000352_190--Hb_000366_040 Hb_005686_090 Hb_005686_090 Hb_000352_190--Hb_005686_090 Hb_000352_190--Hb_002063_020 Hb_000352_190--Hb_004225_050 Hb_008959_010 Hb_008959_010 Hb_000352_190--Hb_008959_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45491 3.37037 2.37065 2.47404 3.70543 5.69412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1682 3.89286 8.60867 4.35668 7.12415

CAGE analysis