Hb_000883_060

Information

Type transcription factor
Description TF Family: SNF2
Location Contig883: 65372-70378
Sequence    

Annotation

kegg
ID rcu:RCOM_0855790
description ATP-dependent helicase, putative (EC:2.7.11.1)
nr
ID XP_012075760.1
description PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
swissprot
ID F4I8S3
description SNF2 domain-containing protein CLASSY 3 OS=Arabidopsis thaliana GN=CLSY3 PE=1 SV=1
trembl
ID B9RUR3
description ATP-dependent helicase, putative OS=Ricinus communis GN=RCOM_0855790 PE=4 SV=1
Gene Ontology
ID GO:0003677
description snf2 domain-containing protein classy 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61456: 65186-65870 , PASA_asmbl_61457: 66439-66656 , PASA_asmbl_61458: 67062-68027 , PASA_asmbl_61459: 69322-69662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_060 0.0 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
2 Hb_000010_340 0.0802604587 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
3 Hb_001341_070 0.086718062 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
4 Hb_001671_010 0.0930309878 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
5 Hb_015941_020 0.0940902337 - - -
6 Hb_006711_100 0.0941119674 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
7 Hb_000913_020 0.0948205821 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_000352_190 0.0953453334 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
9 Hb_005686_090 0.0965267493 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
10 Hb_001049_110 0.1052971676 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000631_080 0.1056067718 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
12 Hb_004225_050 0.1070174409 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_000204_120 0.109896965 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
14 Hb_005736_020 0.1102918983 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
15 Hb_004712_130 0.1108161295 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
16 Hb_003020_220 0.1110361626 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
17 Hb_006915_030 0.1112064295 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
18 Hb_012799_030 0.1116684519 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
19 Hb_002725_120 0.1121736361 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
20 Hb_003291_010 0.1141192802 - - ATP-dependent protease La, putative [Ricinus communis]

Gene co-expression network

sample Hb_000883_060 Hb_000883_060 Hb_000010_340 Hb_000010_340 Hb_000883_060--Hb_000010_340 Hb_001341_070 Hb_001341_070 Hb_000883_060--Hb_001341_070 Hb_001671_010 Hb_001671_010 Hb_000883_060--Hb_001671_010 Hb_015941_020 Hb_015941_020 Hb_000883_060--Hb_015941_020 Hb_006711_100 Hb_006711_100 Hb_000883_060--Hb_006711_100 Hb_000913_020 Hb_000913_020 Hb_000883_060--Hb_000913_020 Hb_000010_340--Hb_006711_100 Hb_000352_190 Hb_000352_190 Hb_000010_340--Hb_000352_190 Hb_001817_020 Hb_001817_020 Hb_000010_340--Hb_001817_020 Hb_000010_340--Hb_000913_020 Hb_000471_110 Hb_000471_110 Hb_000010_340--Hb_000471_110 Hb_000335_030 Hb_000335_030 Hb_001341_070--Hb_000335_030 Hb_000556_090 Hb_000556_090 Hb_001341_070--Hb_000556_090 Hb_029510_050 Hb_029510_050 Hb_001341_070--Hb_029510_050 Hb_002685_210 Hb_002685_210 Hb_001341_070--Hb_002685_210 Hb_003153_010 Hb_003153_010 Hb_001341_070--Hb_003153_010 Hb_004225_050 Hb_004225_050 Hb_001671_010--Hb_004225_050 Hb_001671_010--Hb_015941_020 Hb_008221_180 Hb_008221_180 Hb_001671_010--Hb_008221_180 Hb_005496_130 Hb_005496_130 Hb_001671_010--Hb_005496_130 Hb_002725_120 Hb_002725_120 Hb_001671_010--Hb_002725_120 Hb_005686_090 Hb_005686_090 Hb_001671_010--Hb_005686_090 Hb_001049_110 Hb_001049_110 Hb_015941_020--Hb_001049_110 Hb_010883_040 Hb_010883_040 Hb_015941_020--Hb_010883_040 Hb_015941_020--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_015941_020--Hb_018133_090 Hb_012799_030 Hb_012799_030 Hb_006711_100--Hb_012799_030 Hb_000707_050 Hb_000707_050 Hb_006711_100--Hb_000707_050 Hb_006711_100--Hb_004225_050 Hb_000388_090 Hb_000388_090 Hb_006711_100--Hb_000388_090 Hb_006711_100--Hb_000352_190 Hb_009780_030 Hb_009780_030 Hb_000913_020--Hb_009780_030 Hb_007508_060 Hb_007508_060 Hb_000913_020--Hb_007508_060 Hb_000497_300 Hb_000497_300 Hb_000913_020--Hb_000497_300 Hb_000340_230 Hb_000340_230 Hb_000913_020--Hb_000340_230 Hb_002988_040 Hb_002988_040 Hb_000913_020--Hb_002988_040 Hb_001163_100 Hb_001163_100 Hb_000913_020--Hb_001163_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55935 1.59924 1.02762 1.40269 1.66303 2.21068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96125 1.70538 4.01995 1.35534 4.01593

CAGE analysis