Hb_000010_340

Information

Type -
Description -
Location Contig10: 379407-382881
Sequence    

Annotation

kegg
ID rcu:RCOM_0680230
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012079930.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
swissprot
ID Q9FGR7
description Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1
trembl
ID A0A067K438
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11367 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00174: 375477-378701 , PASA_asmbl_00175: 379896-382769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_340 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
2 Hb_000883_060 0.0802604587 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
3 Hb_006711_100 0.1033204109 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
4 Hb_000352_190 0.1040804307 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
5 Hb_001817_020 0.1052525625 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
6 Hb_000913_020 0.1066697368 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_000471_110 0.1068821455 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
8 Hb_000047_030 0.1111193608 - - tfiif-alpha, putative [Ricinus communis]
9 Hb_000836_040 0.1119845935 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_000707_050 0.1123543856 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
11 Hb_004712_130 0.1130109922 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
12 Hb_001049_110 0.1140158039 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000479_140 0.1140521615 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
14 Hb_000366_040 0.1144161424 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
15 Hb_001090_050 0.1191374693 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
16 Hb_030565_030 0.1193034155 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
17 Hb_001341_070 0.1199231447 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
18 Hb_002307_170 0.1202800526 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
19 Hb_164010_030 0.1220013507 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
20 Hb_003020_220 0.1249356123 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000010_340 Hb_000010_340 Hb_000883_060 Hb_000883_060 Hb_000010_340--Hb_000883_060 Hb_006711_100 Hb_006711_100 Hb_000010_340--Hb_006711_100 Hb_000352_190 Hb_000352_190 Hb_000010_340--Hb_000352_190 Hb_001817_020 Hb_001817_020 Hb_000010_340--Hb_001817_020 Hb_000913_020 Hb_000913_020 Hb_000010_340--Hb_000913_020 Hb_000471_110 Hb_000471_110 Hb_000010_340--Hb_000471_110 Hb_001341_070 Hb_001341_070 Hb_000883_060--Hb_001341_070 Hb_001671_010 Hb_001671_010 Hb_000883_060--Hb_001671_010 Hb_015941_020 Hb_015941_020 Hb_000883_060--Hb_015941_020 Hb_000883_060--Hb_006711_100 Hb_000883_060--Hb_000913_020 Hb_012799_030 Hb_012799_030 Hb_006711_100--Hb_012799_030 Hb_000707_050 Hb_000707_050 Hb_006711_100--Hb_000707_050 Hb_004225_050 Hb_004225_050 Hb_006711_100--Hb_004225_050 Hb_000388_090 Hb_000388_090 Hb_006711_100--Hb_000388_090 Hb_006711_100--Hb_000352_190 Hb_028912_050 Hb_028912_050 Hb_000352_190--Hb_028912_050 Hb_000366_040 Hb_000366_040 Hb_000352_190--Hb_000366_040 Hb_005686_090 Hb_005686_090 Hb_000352_190--Hb_005686_090 Hb_002063_020 Hb_002063_020 Hb_000352_190--Hb_002063_020 Hb_000352_190--Hb_004225_050 Hb_008959_010 Hb_008959_010 Hb_000352_190--Hb_008959_010 Hb_001493_180 Hb_001493_180 Hb_001817_020--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_001817_020--Hb_001090_050 Hb_000059_050 Hb_000059_050 Hb_001817_020--Hb_000059_050 Hb_000260_570 Hb_000260_570 Hb_001817_020--Hb_000260_570 Hb_015198_020 Hb_015198_020 Hb_001817_020--Hb_015198_020 Hb_009780_030 Hb_009780_030 Hb_000913_020--Hb_009780_030 Hb_007508_060 Hb_007508_060 Hb_000913_020--Hb_007508_060 Hb_000497_300 Hb_000497_300 Hb_000913_020--Hb_000497_300 Hb_000340_230 Hb_000340_230 Hb_000913_020--Hb_000340_230 Hb_002988_040 Hb_002988_040 Hb_000913_020--Hb_002988_040 Hb_001163_100 Hb_001163_100 Hb_000913_020--Hb_001163_100 Hb_000479_140 Hb_000479_140 Hb_000471_110--Hb_000479_140 Hb_000406_130 Hb_000406_130 Hb_000471_110--Hb_000406_130 Hb_000116_260 Hb_000116_260 Hb_000471_110--Hb_000116_260 Hb_001352_020 Hb_001352_020 Hb_000471_110--Hb_001352_020 Hb_000471_110--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000471_110--Hb_164010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.82346 6.58267 3.85113 8.54121 9.70747 9.629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94279 10.8759 24.9079 8.20502 19.7056

CAGE analysis