Hb_000059_050

Information

Type -
Description -
Location Contig59: 40031-43320
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07510g
description POPTRDRAFT_798654; hypothetical protein
nr
ID KDP43080.1
description hypothetical protein JCGZ_25266 [Jatropha curcas]
swissprot
ID O23657
description Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1
trembl
ID A0A067LEY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25266 PE=3 SV=1
Gene Ontology
ID GO:0005488
description ras-related protein rabc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_050 0.0 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
2 Hb_004079_030 0.0870502552 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
3 Hb_003992_170 0.0889552718 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
4 Hb_119600_070 0.093076949 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
5 Hb_001946_330 0.0947824673 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
6 Hb_000066_080 0.0992973034 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
7 Hb_000047_030 0.1031107637 - - tfiif-alpha, putative [Ricinus communis]
8 Hb_000085_400 0.105291264 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
9 Hb_024128_020 0.1089072744 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
10 Hb_001430_070 0.1096558246 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002685_210 0.113544811 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
12 Hb_007904_260 0.1150898984 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
13 Hb_000046_320 0.1152190927 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_006162_010 0.1157610381 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
15 Hb_000749_220 0.1163117514 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
16 Hb_000836_040 0.1164921899 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_164010_030 0.1177186817 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_001341_070 0.118425679 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
19 Hb_001390_130 0.1195581729 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
20 Hb_001817_020 0.1195695453 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_050 Hb_000059_050 Hb_004079_030 Hb_004079_030 Hb_000059_050--Hb_004079_030 Hb_003992_170 Hb_003992_170 Hb_000059_050--Hb_003992_170 Hb_119600_070 Hb_119600_070 Hb_000059_050--Hb_119600_070 Hb_001946_330 Hb_001946_330 Hb_000059_050--Hb_001946_330 Hb_000066_080 Hb_000066_080 Hb_000059_050--Hb_000066_080 Hb_000047_030 Hb_000047_030 Hb_000059_050--Hb_000047_030 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_004079_030--Hb_119600_070 Hb_003992_170--Hb_001946_330 Hb_000749_270 Hb_000749_270 Hb_003992_170--Hb_000749_270 Hb_002284_310 Hb_002284_310 Hb_003992_170--Hb_002284_310 Hb_003992_170--Hb_004079_030 Hb_000836_040 Hb_000836_040 Hb_003992_170--Hb_000836_040 Hb_119600_070--Hb_000066_080 Hb_001711_020 Hb_001711_020 Hb_119600_070--Hb_001711_020 Hb_000599_250 Hb_000599_250 Hb_119600_070--Hb_000599_250 Hb_000538_070 Hb_000538_070 Hb_119600_070--Hb_000538_070 Hb_000046_320 Hb_000046_320 Hb_119600_070--Hb_000046_320 Hb_000749_220 Hb_000749_220 Hb_119600_070--Hb_000749_220 Hb_000853_190 Hb_000853_190 Hb_001946_330--Hb_000853_190 Hb_001545_100 Hb_001545_100 Hb_001946_330--Hb_001545_100 Hb_000436_130 Hb_000436_130 Hb_001946_330--Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_001946_330--Hb_009339_030 Hb_002620_020 Hb_002620_020 Hb_000066_080--Hb_002620_020 Hb_000003_250 Hb_000003_250 Hb_000066_080--Hb_000003_250 Hb_000783_020 Hb_000783_020 Hb_000066_080--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_000066_080--Hb_003697_040 Hb_000066_080--Hb_000749_220 Hb_015198_020 Hb_015198_020 Hb_000047_030--Hb_015198_020 Hb_000574_390 Hb_000574_390 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_013405_030 Hb_013405_030 Hb_000047_030--Hb_013405_030 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_001140_220 Hb_001140_220 Hb_000047_030--Hb_001140_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84199 2.89676 5.28133 10.1768 6.89029 10.7504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9717 10.2127 22.2789 4.81675 12.2395

CAGE analysis