Hb_000538_070

Information

Type -
Description -
Location Contig538: 52515-60810
Sequence    

Annotation

kegg
ID rcu:RCOM_1604100
description coatomer delta subunit, putative
nr
ID XP_012074712.1
description PREDICTED: coatomer subunit delta [Jatropha curcas]
swissprot
ID Q93Y22
description Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2
trembl
ID A0A067KU07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10492 PE=4 SV=1
Gene Ontology
ID GO:0005829
description coatomer subunit delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47632: 54733-60711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_070 0.0 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
2 Hb_000096_010 0.0703269378 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
3 Hb_119600_070 0.0803519381 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
4 Hb_001390_130 0.0853538803 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
5 Hb_000291_080 0.0873475373 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
6 Hb_009339_030 0.0879771222 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
7 Hb_003540_030 0.0895515454 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
8 Hb_005488_200 0.0912331882 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
9 Hb_034380_020 0.0934699599 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
10 Hb_004696_080 0.0944060585 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
11 Hb_005306_180 0.0944814431 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
12 Hb_004079_030 0.0945863255 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
13 Hb_005765_050 0.0947488774 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
14 Hb_000130_050 0.096378523 - - 14-3-3 protein, putative [Ricinus communis]
15 Hb_000749_220 0.0991831584 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
16 Hb_001936_010 0.1001339725 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
17 Hb_019654_030 0.1002627415 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
18 Hb_000521_130 0.1004762239 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
19 Hb_007416_060 0.1005199447 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
20 Hb_000116_270 0.1016181384 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000538_070 Hb_000538_070 Hb_000096_010 Hb_000096_010 Hb_000538_070--Hb_000096_010 Hb_119600_070 Hb_119600_070 Hb_000538_070--Hb_119600_070 Hb_001390_130 Hb_001390_130 Hb_000538_070--Hb_001390_130 Hb_000291_080 Hb_000291_080 Hb_000538_070--Hb_000291_080 Hb_009339_030 Hb_009339_030 Hb_000538_070--Hb_009339_030 Hb_003540_030 Hb_003540_030 Hb_000538_070--Hb_003540_030 Hb_000749_220 Hb_000749_220 Hb_000096_010--Hb_000749_220 Hb_000130_050 Hb_000130_050 Hb_000096_010--Hb_000130_050 Hb_003177_030 Hb_003177_030 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050 Hb_002998_060 Hb_002998_060 Hb_000096_010--Hb_002998_060 Hb_000066_080 Hb_000066_080 Hb_119600_070--Hb_000066_080 Hb_001711_020 Hb_001711_020 Hb_119600_070--Hb_001711_020 Hb_000599_250 Hb_000599_250 Hb_119600_070--Hb_000599_250 Hb_000046_320 Hb_000046_320 Hb_119600_070--Hb_000046_320 Hb_119600_070--Hb_000749_220 Hb_001390_130--Hb_000291_080 Hb_002111_040 Hb_002111_040 Hb_001390_130--Hb_002111_040 Hb_003697_040 Hb_003697_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000291_080--Hb_002111_040 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360 Hb_000436_130 Hb_000436_130 Hb_009339_030--Hb_000436_130 Hb_001013_030 Hb_001013_030 Hb_009339_030--Hb_001013_030 Hb_000288_030 Hb_000288_030 Hb_009339_030--Hb_000288_030 Hb_050514_010 Hb_050514_010 Hb_009339_030--Hb_050514_010 Hb_009339_030--Hb_007416_060 Hb_000827_050 Hb_000827_050 Hb_009339_030--Hb_000827_050 Hb_000140_050 Hb_000140_050 Hb_003540_030--Hb_000140_050 Hb_001545_100 Hb_001545_100 Hb_003540_030--Hb_001545_100 Hb_000120_960 Hb_000120_960 Hb_003540_030--Hb_000120_960 Hb_001776_160 Hb_001776_160 Hb_003540_030--Hb_001776_160 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8469 10.4107 20.0486 30.4366 13.1318 23.1905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1811 32.1025 52.4961 26.1608 16.3089

CAGE analysis