Hb_000140_050

Information

Type -
Description -
Location Contig140: 29737-40734
Sequence    

Annotation

kegg
ID rcu:RCOM_1616380
description bmru protein, putative
nr
ID XP_012083319.1
description PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
swissprot
ID O82359
description Sphingoid long-chain bases kinase 2, mitochondrial OS=Arabidopsis thaliana GN=LCKB2 PE=2 SV=1
trembl
ID A0A067JX76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14342 PE=4 SV=1
Gene Ontology
ID GO:0003951
description sphingoid long-chain bases kinase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10807: 29736-40718 , PASA_asmbl_10808: 38561-40718 , PASA_asmbl_10809: 29738-40246 , PASA_asmbl_10810: 29803-30953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_050 0.0 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
2 Hb_003540_030 0.0681389143 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
3 Hb_006831_120 0.0707555827 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
4 Hb_001545_100 0.0807225093 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
5 Hb_001776_160 0.0847539845 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
6 Hb_028872_080 0.0864006804 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
7 Hb_007904_260 0.0873976096 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
8 Hb_001461_010 0.0902378873 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
9 Hb_001904_090 0.0908648628 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
10 Hb_068056_030 0.0933516026 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
11 Hb_001279_340 0.0944720784 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
12 Hb_000638_250 0.0956113491 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000103_320 0.0995635304 - - Stem-specific protein TSJT1, putative [Ricinus communis]
14 Hb_001396_100 0.0996223652 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000805_250 0.1003123457 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
16 Hb_002110_200 0.1003929011 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000240_090 0.1010215046 - - Rab5 [Hevea brasiliensis]
18 Hb_002742_090 0.1011033326 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
19 Hb_000962_040 0.1011370216 - - heat shock protein binding protein, putative [Ricinus communis]
20 Hb_006711_060 0.1016427784 - - Tubulin beta-1 chain [Morus notabilis]

Gene co-expression network

sample Hb_000140_050 Hb_000140_050 Hb_003540_030 Hb_003540_030 Hb_000140_050--Hb_003540_030 Hb_006831_120 Hb_006831_120 Hb_000140_050--Hb_006831_120 Hb_001545_100 Hb_001545_100 Hb_000140_050--Hb_001545_100 Hb_001776_160 Hb_001776_160 Hb_000140_050--Hb_001776_160 Hb_028872_080 Hb_028872_080 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260 Hb_003540_030--Hb_001545_100 Hb_000120_960 Hb_000120_960 Hb_003540_030--Hb_000120_960 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_006831_120--Hb_028872_080 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_027654_050 Hb_027654_050 Hb_001776_160--Hb_027654_050 Hb_001085_120 Hb_001085_120 Hb_001776_160--Hb_001085_120 Hb_002110_200 Hb_002110_200 Hb_001776_160--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_026889_030 Hb_026889_030 Hb_028872_080--Hb_026889_030 Hb_017225_020 Hb_017225_020 Hb_028872_080--Hb_017225_020 Hb_010361_010 Hb_010361_010 Hb_028872_080--Hb_010361_010 Hb_118419_010 Hb_118419_010 Hb_028872_080--Hb_118419_010 Hb_001604_060 Hb_001604_060 Hb_028872_080--Hb_001604_060 Hb_000046_320 Hb_000046_320 Hb_007904_260--Hb_000046_320 Hb_003053_020 Hb_003053_020 Hb_007904_260--Hb_003053_020 Hb_001512_030 Hb_001512_030 Hb_007904_260--Hb_001512_030 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_003697_040 Hb_003697_040 Hb_007904_260--Hb_003697_040 Hb_007904_260--Hb_000638_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66787 2.55695 9.07839 10.1799 5.96893 10.6105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5667 21.2917 26.1413 6.16678 8.62924

CAGE analysis