Hb_003540_030

Information

Type -
Description -
Location Contig3540: 21588-28517
Sequence    

Annotation

kegg
ID rcu:RCOM_1126130
description Ran GTPase binding protein, putative
nr
ID XP_012084924.1
description PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067K5D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20964 PE=4 SV=1
Gene Ontology
ID GO:0016705
description ultraviolet-b receptor uvr8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36690: 21561-27625 , PASA_asmbl_36691: 21561-24344 , PASA_asmbl_36692: 24346-24597 , PASA_asmbl_36693: 27682-28508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_030 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
2 Hb_000140_050 0.0681389143 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
3 Hb_001545_100 0.0805596137 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
4 Hb_000120_960 0.0835126126 - - isocitrate dehydrogenase, putative [Ricinus communis]
5 Hb_001776_160 0.0846182003 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
6 Hb_000436_130 0.0846389939 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
7 Hb_000086_280 0.0853188604 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
8 Hb_006711_060 0.0854717703 - - Tubulin beta-1 chain [Morus notabilis]
9 Hb_000046_320 0.0858901626 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
10 Hb_006831_120 0.0865061705 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
11 Hb_009339_030 0.087275656 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
12 Hb_000638_250 0.0874627924 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_007904_260 0.089175991 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
14 Hb_000538_070 0.0895515454 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
15 Hb_148121_040 0.0929029282 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_000336_240 0.0934010447 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
17 Hb_004696_080 0.0947363906 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
18 Hb_003053_020 0.0965345737 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
19 Hb_119600_070 0.0967458616 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
20 Hb_001013_030 0.0982932395 - - GTP-binding protein yptv3, putative [Ricinus communis]

Gene co-expression network

sample Hb_003540_030 Hb_003540_030 Hb_000140_050 Hb_000140_050 Hb_003540_030--Hb_000140_050 Hb_001545_100 Hb_001545_100 Hb_003540_030--Hb_001545_100 Hb_000120_960 Hb_000120_960 Hb_003540_030--Hb_000120_960 Hb_001776_160 Hb_001776_160 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280 Hb_006831_120 Hb_006831_120 Hb_000140_050--Hb_006831_120 Hb_000140_050--Hb_001545_100 Hb_000140_050--Hb_001776_160 Hb_028872_080 Hb_028872_080 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000120_960--Hb_000086_280 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_001776_160--Hb_006831_120 Hb_027654_050 Hb_027654_050 Hb_001776_160--Hb_027654_050 Hb_001085_120 Hb_001085_120 Hb_001776_160--Hb_001085_120 Hb_002110_200 Hb_002110_200 Hb_001776_160--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_009339_030 Hb_009339_030 Hb_000436_130--Hb_009339_030 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_000733_180 Hb_000733_180 Hb_000436_130--Hb_000733_180 Hb_003697_040 Hb_003697_040 Hb_000436_130--Hb_003697_040 Hb_001013_030 Hb_001013_030 Hb_000436_130--Hb_001013_030 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_000086_280--Hb_001085_120 Hb_000086_280--Hb_001776_160 Hb_000638_250 Hb_000638_250 Hb_000086_280--Hb_000638_250 Hb_000261_140 Hb_000261_140 Hb_000086_280--Hb_000261_140 Hb_000240_090 Hb_000240_090 Hb_000086_280--Hb_000240_090 Hb_000453_120 Hb_000453_120 Hb_000086_280--Hb_000453_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.363 5.59507 15.8827 19.1053 10.9636 13.7304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0157 31.8988 43.0431 12.9714 12.7593

CAGE analysis