Hb_000120_960

Information

Type -
Description -
Location Contig120: 736312-741496
Sequence    

Annotation

kegg
ID rcu:RCOM_0519460
description isocitrate dehydrogenase, putative (EC:1.1.1.41)
nr
ID XP_002528761.1
description isocitrate dehydrogenase, putative [Ricinus communis]
swissprot
ID O81796
description Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1
trembl
ID B9SRZ2
description Isocitrate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0519460 PE=3 SV=1
Gene Ontology
ID GO:0000287
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06238: 736313-741324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_960 0.0 - - isocitrate dehydrogenase, putative [Ricinus communis]
2 Hb_002660_070 0.0667387772 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
3 Hb_010407_180 0.0773725005 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
4 Hb_000086_280 0.0804006138 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
5 Hb_003540_030 0.0835126126 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
6 Hb_020805_130 0.0850087381 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_007044_120 0.0857145445 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
8 Hb_000155_200 0.0860548252 - - Rab7 [Hevea brasiliensis]
9 Hb_000240_090 0.0891063753 - - Rab5 [Hevea brasiliensis]
10 Hb_050514_010 0.0894497784 - - hypothetical protein 29 [Hevea brasiliensis]
11 Hb_001279_340 0.0896662021 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
12 Hb_006711_060 0.0903879697 - - Tubulin beta-1 chain [Morus notabilis]
13 Hb_000638_250 0.0914503287 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000915_090 0.0917154502 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
15 Hb_029879_130 0.0923998956 - - Derlin-2, putative [Ricinus communis]
16 Hb_000039_160 0.0950363396 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
17 Hb_006831_120 0.0952669975 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
18 Hb_003053_020 0.0956523456 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
19 Hb_008616_070 0.0962087349 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
20 Hb_031862_110 0.0976587729 - - calcium-dependent protein kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000120_960 Hb_000120_960 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_008616_070 Hb_008616_070 Hb_002660_070--Hb_008616_070 Hb_001507_040 Hb_001507_040 Hb_002660_070--Hb_001507_040 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_002660_070--Hb_020805_130 Hb_001279_340 Hb_001279_340 Hb_010407_180--Hb_001279_340 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_001085_120 Hb_001085_120 Hb_000086_280--Hb_001085_120 Hb_001776_160 Hb_001776_160 Hb_000086_280--Hb_001776_160 Hb_000638_250 Hb_000638_250 Hb_000086_280--Hb_000638_250 Hb_000261_140 Hb_000261_140 Hb_000086_280--Hb_000261_140 Hb_000240_090 Hb_000240_090 Hb_000086_280--Hb_000240_090 Hb_000453_120 Hb_000453_120 Hb_000086_280--Hb_000453_120 Hb_000140_050 Hb_000140_050 Hb_003540_030--Hb_000140_050 Hb_001545_100 Hb_001545_100 Hb_003540_030--Hb_001545_100 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_003540_030--Hb_000086_280 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_020805_130--Hb_001507_040 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_021596_090 Hb_021596_090 Hb_007044_120--Hb_021596_090 Hb_007044_120--Hb_000638_250 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1097 19.3722 27.2655 25.327 21.0165 17.4203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.4893 52.9908 72.7078 21.3309 20.2491

CAGE analysis