Hb_003582_040

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3582: 65759-68337
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11160g
description hypothetical protein
nr
ID XP_006378427.1
description hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
swissprot
ID F4IPE3
description Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1
trembl
ID A9PFF0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11160g PE=2 SV=1
Gene Ontology
ID GO:0003676
description protein shoot gravitropism 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36984: 65562-68141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003582_040 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
2 Hb_010407_180 0.1030498623 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
3 Hb_000592_020 0.1113903921 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
4 Hb_000141_020 0.124034694 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
5 Hb_000147_040 0.1241418522 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
6 Hb_000258_330 0.1251786878 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_005569_020 0.1268710521 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000406_120 0.1327787486 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
9 Hb_008062_070 0.1336202757 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
10 Hb_001279_340 0.1339922679 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
11 Hb_000125_030 0.1350446559 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
12 Hb_001096_110 0.136551358 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_002045_180 0.1391879077 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
14 Hb_008948_100 0.1396419489 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
15 Hb_000120_960 0.1410626861 - - isocitrate dehydrogenase, putative [Ricinus communis]
16 Hb_000046_100 0.141649542 - - NADH dehydrogenase, putative [Ricinus communis]
17 Hb_065525_090 0.1459163058 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
18 Hb_009510_020 0.1480670532 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
19 Hb_000103_320 0.1508059713 - - Stem-specific protein TSJT1, putative [Ricinus communis]
20 Hb_000915_090 0.1513409277 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]

Gene co-expression network

sample Hb_003582_040 Hb_003582_040 Hb_010407_180 Hb_010407_180 Hb_003582_040--Hb_010407_180 Hb_000592_020 Hb_000592_020 Hb_003582_040--Hb_000592_020 Hb_000141_020 Hb_000141_020 Hb_003582_040--Hb_000141_020 Hb_000147_040 Hb_000147_040 Hb_003582_040--Hb_000147_040 Hb_000258_330 Hb_000258_330 Hb_003582_040--Hb_000258_330 Hb_005569_020 Hb_005569_020 Hb_003582_040--Hb_005569_020 Hb_000120_960 Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_001279_340 Hb_001279_340 Hb_010407_180--Hb_001279_340 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_020805_130 Hb_020805_130 Hb_000592_020--Hb_020805_130 Hb_002027_040 Hb_002027_040 Hb_000592_020--Hb_002027_040 Hb_000567_120 Hb_000567_120 Hb_000592_020--Hb_000567_120 Hb_004607_030 Hb_004607_030 Hb_000592_020--Hb_004607_030 Hb_000592_020--Hb_000120_960 Hb_000108_070 Hb_000108_070 Hb_000592_020--Hb_000108_070 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_000147_040--Hb_010407_180 Hb_000147_040--Hb_002027_040 Hb_065525_090 Hb_065525_090 Hb_000147_040--Hb_065525_090 Hb_000147_040--Hb_000592_020 Hb_019263_020 Hb_019263_020 Hb_000147_040--Hb_019263_020 Hb_000147_040--Hb_000120_960 Hb_004225_080 Hb_004225_080 Hb_000258_330--Hb_004225_080 Hb_000046_100 Hb_000046_100 Hb_000258_330--Hb_000046_100 Hb_001080_280 Hb_001080_280 Hb_000258_330--Hb_001080_280 Hb_009510_020 Hb_009510_020 Hb_000258_330--Hb_009510_020 Hb_000258_330--Hb_001279_340 Hb_001096_110 Hb_001096_110 Hb_005569_020--Hb_001096_110 Hb_005569_020--Hb_000141_020 Hb_005569_020--Hb_010407_180 Hb_005569_020--Hb_000406_120 Hb_005569_020--Hb_001159_080 Hb_005569_020--Hb_000108_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6594 15.9659 12.8215 17.5104 4.58188 7.41403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.8546 27.363 44.4812 6.20507 9.53833

CAGE analysis