Hb_000099_130

Information

Type -
Description -
Location Contig99: 174323-178001
Sequence    

Annotation

kegg
ID rcu:RCOM_1689480
description transcription factor, putative
nr
ID XP_012086797.1
description PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067JNA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20513 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64732: 173000-178283 , PASA_asmbl_64733: 175537-178283 , PASA_asmbl_64734: 173001-178283 , PASA_asmbl_64736: 173154-173634 , PASA_asmbl_64737: 173113-175198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_130 0.0 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
2 Hb_001135_210 0.0829976749 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
3 Hb_000141_020 0.100677223 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
4 Hb_001232_140 0.1048256001 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
5 Hb_001159_080 0.1118758443 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
6 Hb_000424_210 0.1130733886 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
7 Hb_162275_030 0.1159453978 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
8 Hb_000963_140 0.1162241824 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000836_130 0.1196275182 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
10 Hb_003581_260 0.1207216187 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
11 Hb_003504_020 0.1250025495 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
12 Hb_152910_020 0.1261916766 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
13 Hb_007382_150 0.1265437543 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
14 Hb_000196_080 0.1266750378 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
15 Hb_006472_050 0.1268670111 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
16 Hb_001006_180 0.1268886167 - - PREDICTED: endonuclease V-like [Jatropha curcas]
17 Hb_021409_160 0.1270745079 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
18 Hb_000784_030 0.1275357408 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
19 Hb_002774_050 0.1295284441 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
20 Hb_001519_030 0.1305822148 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_130 Hb_000099_130 Hb_001135_210 Hb_001135_210 Hb_000099_130--Hb_001135_210 Hb_000141_020 Hb_000141_020 Hb_000099_130--Hb_000141_020 Hb_001232_140 Hb_001232_140 Hb_000099_130--Hb_001232_140 Hb_001159_080 Hb_001159_080 Hb_000099_130--Hb_001159_080 Hb_000424_210 Hb_000424_210 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030 Hb_001135_210--Hb_001232_140 Hb_002182_030 Hb_002182_030 Hb_001135_210--Hb_002182_030 Hb_000784_030 Hb_000784_030 Hb_001135_210--Hb_000784_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_006472_050 Hb_006472_050 Hb_001135_210--Hb_006472_050 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000125_030 Hb_000125_030 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_000141_020--Hb_001159_080 Hb_005663_120 Hb_005663_120 Hb_001232_140--Hb_005663_120 Hb_032969_030 Hb_032969_030 Hb_001232_140--Hb_032969_030 Hb_000896_120 Hb_000896_120 Hb_001232_140--Hb_000896_120 Hb_001232_140--Hb_001157_010 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_003581_260 Hb_003581_260 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_001159_080--Hb_000125_030 Hb_002659_040 Hb_002659_040 Hb_000424_210--Hb_002659_040 Hb_000196_080 Hb_000196_080 Hb_000424_210--Hb_000196_080 Hb_001519_030 Hb_001519_030 Hb_000424_210--Hb_001519_030 Hb_093458_050 Hb_093458_050 Hb_000424_210--Hb_093458_050 Hb_000162_140 Hb_000162_140 Hb_000424_210--Hb_000162_140 Hb_001006_180 Hb_001006_180 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.8884 39.0783 16.8557 64.3427 27.0628 35.6251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
199.424 189.95 250.49 33.6743 38.1956

CAGE analysis