Hb_162275_030

Information

Type -
Description -
Location Contig162275: 17340-18200
Sequence    

Annotation

kegg
ID vvi:100251043
description uncharacterized LOC100251043
nr
ID XP_012087914.1
description PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1BT83
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020322 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14660: 17268-18203
cDNA
(Sanger)
(ID:Location)		 033_I23r.ab1: 16982-17651

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162275_030 0.0 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
2 Hb_001006_180 0.0914842104 - - PREDICTED: endonuclease V-like [Jatropha curcas]
3 Hb_001762_060 0.0984136849 - - pantothenate kinase, putative [Ricinus communis]
4 Hb_002735_060 0.0993262909 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
5 Hb_002119_120 0.109791595 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
6 Hb_007382_150 0.1100830783 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
7 Hb_000069_550 0.1107739029 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
8 Hb_000907_090 0.1116393467 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_006573_220 0.111713908 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
10 Hb_004738_010 0.112739505 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
11 Hb_003687_150 0.1134238446 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
12 Hb_007926_060 0.1134348824 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
13 Hb_000424_210 0.1141496862 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
14 Hb_008544_010 0.1144098468 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
15 Hb_000069_100 0.1152873778 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000099_130 0.1159453978 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
17 Hb_002027_210 0.1163202453 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_001191_090 0.1179951352 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
19 Hb_006472_050 0.1185161546 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
20 Hb_000398_160 0.1187185037 - - GDP-mannose transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_162275_030 Hb_162275_030 Hb_001006_180 Hb_001006_180 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_001006_180--Hb_001762_060 Hb_024714_060 Hb_024714_060 Hb_001006_180--Hb_024714_060 Hb_012423_050 Hb_012423_050 Hb_001006_180--Hb_012423_050 Hb_006831_030 Hb_006831_030 Hb_001006_180--Hb_006831_030 Hb_000398_160 Hb_000398_160 Hb_001006_180--Hb_000398_160 Hb_000032_040 Hb_000032_040 Hb_001762_060--Hb_000032_040 Hb_000069_100 Hb_000069_100 Hb_001762_060--Hb_000069_100 Hb_001762_060--Hb_024714_060 Hb_001762_060--Hb_012423_050 Hb_001762_060--Hb_000398_160 Hb_157022_020 Hb_157022_020 Hb_002735_060--Hb_157022_020 Hb_002539_080 Hb_002539_080 Hb_002735_060--Hb_002539_080 Hb_092100_020 Hb_092100_020 Hb_002735_060--Hb_092100_020 Hb_001863_480 Hb_001863_480 Hb_002735_060--Hb_001863_480 Hb_002716_070 Hb_002716_070 Hb_002735_060--Hb_002716_070 Hb_004738_010 Hb_004738_010 Hb_002119_120--Hb_004738_010 Hb_001439_170 Hb_001439_170 Hb_002119_120--Hb_001439_170 Hb_002119_120--Hb_001863_480 Hb_000487_310 Hb_000487_310 Hb_002119_120--Hb_000487_310 Hb_001711_030 Hb_001711_030 Hb_002119_120--Hb_001711_030 Hb_001437_220 Hb_001437_220 Hb_002119_120--Hb_001437_220 Hb_001616_060 Hb_001616_060 Hb_007382_150--Hb_001616_060 Hb_002097_060 Hb_002097_060 Hb_007382_150--Hb_002097_060 Hb_006573_220 Hb_006573_220 Hb_007382_150--Hb_006573_220 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_006569_100 Hb_006569_100 Hb_000069_550--Hb_006569_100 Hb_007594_120 Hb_007594_120 Hb_000069_550--Hb_007594_120 Hb_002603_150 Hb_002603_150 Hb_000069_550--Hb_002603_150 Hb_002876_120 Hb_002876_120 Hb_000069_550--Hb_002876_120 Hb_017948_010 Hb_017948_010 Hb_000069_550--Hb_017948_010 Hb_001191_090 Hb_001191_090 Hb_000069_550--Hb_001191_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8415 7.40859 6.08762 24.888 19.5701 24.3562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.7453 60.8434 81.4625 13.7095 17.3153

CAGE analysis