Hb_002735_060

Information

Type -
Description -
Location Contig2735: 87640-90027
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24310g
description POPTRDRAFT_816898; hypothetical protein
nr
ID XP_012085121.1
description PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
swissprot
ID Q6GLM5
description Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
trembl
ID A0A067JR10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17554 PE=4 SV=1
Gene Ontology
ID GO:0005634
description desumoylating isopeptidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28567: 87480-87767 , PASA_asmbl_28568: 87821-88527 , PASA_asmbl_28569: 88768-90659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002735_060 0.0 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
2 Hb_157022_020 0.0923770667 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
3 Hb_002539_080 0.0939003903 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
4 Hb_162275_030 0.0993262909 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
5 Hb_092100_020 0.1049994332 - - strictosidine synthase, putative [Ricinus communis]
6 Hb_001863_480 0.1051366502 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
7 Hb_002716_070 0.108663525 - - PREDICTED: protein ABIL2 [Jatropha curcas]
8 Hb_001677_110 0.1110996647 - - Protein YIPF1, putative [Ricinus communis]
9 Hb_002119_120 0.1122335532 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
10 Hb_001584_300 0.1133068713 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
11 Hb_001439_170 0.1162518193 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
12 Hb_000907_090 0.1180578627 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_004738_010 0.1200979618 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
14 Hb_000922_270 0.1219853363 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
15 Hb_001912_010 0.1247306229 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
16 Hb_001711_030 0.1247455126 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
17 Hb_001366_200 0.1253303153 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010344_040 0.126806807 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
19 Hb_001762_060 0.1281224371 - - pantothenate kinase, putative [Ricinus communis]
20 Hb_000419_040 0.1284056534 - - chorismate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002735_060 Hb_002735_060 Hb_157022_020 Hb_157022_020 Hb_002735_060--Hb_157022_020 Hb_002539_080 Hb_002539_080 Hb_002735_060--Hb_002539_080 Hb_162275_030 Hb_162275_030 Hb_002735_060--Hb_162275_030 Hb_092100_020 Hb_092100_020 Hb_002735_060--Hb_092100_020 Hb_001863_480 Hb_001863_480 Hb_002735_060--Hb_001863_480 Hb_002716_070 Hb_002716_070 Hb_002735_060--Hb_002716_070 Hb_002681_110 Hb_002681_110 Hb_157022_020--Hb_002681_110 Hb_000922_270 Hb_000922_270 Hb_157022_020--Hb_000922_270 Hb_003408_020 Hb_003408_020 Hb_157022_020--Hb_003408_020 Hb_000174_070 Hb_000174_070 Hb_157022_020--Hb_000174_070 Hb_157022_020--Hb_092100_020 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_001711_030 Hb_001711_030 Hb_002539_080--Hb_001711_030 Hb_002527_070 Hb_002527_070 Hb_002539_080--Hb_002527_070 Hb_002539_080--Hb_001863_480 Hb_001439_170 Hb_001439_170 Hb_002539_080--Hb_001439_170 Hb_001006_180 Hb_001006_180 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_023226_090 Hb_023226_090 Hb_092100_020--Hb_023226_090 Hb_001369_050 Hb_001369_050 Hb_092100_020--Hb_001369_050 Hb_084849_020 Hb_084849_020 Hb_092100_020--Hb_084849_020 Hb_003050_230 Hb_003050_230 Hb_092100_020--Hb_003050_230 Hb_117134_010 Hb_117134_010 Hb_092100_020--Hb_117134_010 Hb_001863_480--Hb_001711_030 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_001863_480--Hb_003408_020 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_000170_010 Hb_000170_010 Hb_002716_070--Hb_000170_010 Hb_003175_040 Hb_003175_040 Hb_002716_070--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_002716_070--Hb_004837_140 Hb_002028_130 Hb_002028_130 Hb_002716_070--Hb_002028_130 Hb_001718_100 Hb_001718_100 Hb_002716_070--Hb_001718_100 Hb_000205_270 Hb_000205_270 Hb_002716_070--Hb_000205_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6038 6.34418 6.55795 24.2563 39.1227 34.7063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.915 52.2698 80.3198 12.015 12.088

CAGE analysis