Hb_023226_090

Information

Type -
Description -
Location Contig23226: 112323-116835
Sequence    

Annotation

kegg
ID rcu:RCOM_0290920
description hypothetical protein
nr
ID XP_012075638.1
description PREDICTED: glycolipid transfer protein [Jatropha curcas]
swissprot
ID O64587
description Accelerated cell death 11 OS=Arabidopsis thaliana GN=ACD11 PE=1 SV=1
trembl
ID A0A067KIU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09231 PE=4 SV=1
Gene Ontology
ID GO:0005737
description accelerated cell death partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24431: 112336-116711 , PASA_asmbl_24432: 111544-113226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_090 0.0 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
2 Hb_092100_020 0.0561333799 - - strictosidine synthase, putative [Ricinus communis]
3 Hb_002352_010 0.0958999151 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
4 Hb_001473_130 0.0980265347 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
5 Hb_002025_320 0.1022617269 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
6 Hb_001369_050 0.102829356 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
7 Hb_157022_020 0.1048961121 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
8 Hb_006788_070 0.107971641 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
9 Hb_003050_230 0.1080144316 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005941_010 0.1083707124 - - PREDICTED: protein SAND [Jatropha curcas]
11 Hb_084849_020 0.1085078374 - - ARF GTPase activator, putative [Ricinus communis]
12 Hb_001677_110 0.1087643698 - - Protein YIPF1, putative [Ricinus communis]
13 Hb_001718_100 0.1114816903 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
14 Hb_071736_020 0.1116457751 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
15 Hb_004659_120 0.1124585489 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
16 Hb_002235_400 0.1138858322 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
17 Hb_001711_030 0.1144109858 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
18 Hb_001427_120 0.1144450724 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_002681_110 0.1149020647 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
20 Hb_002282_020 0.1157783298 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]

Gene co-expression network

sample Hb_023226_090 Hb_023226_090 Hb_092100_020 Hb_092100_020 Hb_023226_090--Hb_092100_020 Hb_002352_010 Hb_002352_010 Hb_023226_090--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_023226_090--Hb_001473_130 Hb_002025_320 Hb_002025_320 Hb_023226_090--Hb_002025_320 Hb_001369_050 Hb_001369_050 Hb_023226_090--Hb_001369_050 Hb_157022_020 Hb_157022_020 Hb_023226_090--Hb_157022_020 Hb_092100_020--Hb_001369_050 Hb_092100_020--Hb_157022_020 Hb_084849_020 Hb_084849_020 Hb_092100_020--Hb_084849_020 Hb_003050_230 Hb_003050_230 Hb_092100_020--Hb_003050_230 Hb_117134_010 Hb_117134_010 Hb_092100_020--Hb_117134_010 Hb_002352_010--Hb_001473_130 Hb_002527_070 Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002326_030 Hb_002326_030 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_001473_130--Hb_002326_030 Hb_001473_130--Hb_002527_070 Hb_001473_130--Hb_000427_110 Hb_001427_120 Hb_001427_120 Hb_002025_320--Hb_001427_120 Hb_000152_140 Hb_000152_140 Hb_002025_320--Hb_000152_140 Hb_001718_100 Hb_001718_100 Hb_002025_320--Hb_001718_100 Hb_002025_320--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_001369_050--Hb_084849_020 Hb_005686_110 Hb_005686_110 Hb_001369_050--Hb_005686_110 Hb_001235_070 Hb_001235_070 Hb_001369_050--Hb_001235_070 Hb_001369_050--Hb_001718_100 Hb_001369_050--Hb_003050_230 Hb_002681_110 Hb_002681_110 Hb_157022_020--Hb_002681_110 Hb_000922_270 Hb_000922_270 Hb_157022_020--Hb_000922_270 Hb_003408_020 Hb_003408_020 Hb_157022_020--Hb_003408_020 Hb_000174_070 Hb_000174_070 Hb_157022_020--Hb_000174_070 Hb_002735_060 Hb_002735_060 Hb_157022_020--Hb_002735_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.32 11.3261 20.5593 54.7775 117.572 225.204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
347.006 171.673 218.02 54.5662 22.9783

CAGE analysis