Hb_002326_030

Information

Type transcription factor
Description TF Family: B3
Location Contig2326: 39547-45955
Sequence    

Annotation

kegg
ID rcu:RCOM_1592610
description DNA binding protein, putative
nr
ID XP_012071732.1
description PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
swissprot
ID Q8RYD1
description B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1
trembl
ID A0A067KTW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04343 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein rem16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24451: 39602-39750 , PASA_asmbl_24452: 39767-42718 , PASA_asmbl_24453: 39798-42604 , PASA_asmbl_24455: 45301-45918
cDNA
(Sanger)
(ID:Location)		 035_K02.ab1: 40655-42718

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_030 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
2 Hb_005455_070 0.0698443841 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
3 Hb_000861_040 0.0743120268 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
4 Hb_012522_030 0.0748861434 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000173_170 0.0792577942 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
6 Hb_001473_130 0.079781564 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
7 Hb_007229_060 0.0821309758 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
8 Hb_001427_120 0.0827779935 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
9 Hb_002527_070 0.0832468549 - - axonemal dynein light chain, putative [Ricinus communis]
10 Hb_002291_030 0.0833883984 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
11 Hb_183963_020 0.0877752369 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
12 Hb_002282_020 0.0898175799 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
13 Hb_001478_050 0.0902464826 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
14 Hb_007047_010 0.0911393795 - - PREDICTED: expansin-A13 [Jatropha curcas]
15 Hb_002352_010 0.0912536937 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
16 Hb_001366_230 0.0929352681 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001981_090 0.0929510469 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
18 Hb_001191_100 0.0934188829 - - F-actin capping protein beta subunit [Populus trichocarpa]
19 Hb_002025_320 0.0941998411 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
20 Hb_000427_110 0.0949458517 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002326_030 Hb_002326_030 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_001141_470 Hb_001141_470 Hb_005455_070--Hb_001141_470 Hb_001478_050 Hb_001478_050 Hb_005455_070--Hb_001478_050 Hb_008695_190 Hb_008695_190 Hb_005455_070--Hb_008695_190 Hb_005455_070--Hb_001473_130 Hb_001981_090 Hb_001981_090 Hb_005455_070--Hb_001981_090 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_007760_030 Hb_007760_030 Hb_000173_170--Hb_007760_030 Hb_007152_020 Hb_007152_020 Hb_000173_170--Hb_007152_020 Hb_001191_100 Hb_001191_100 Hb_000173_170--Hb_001191_100 Hb_065500_050 Hb_065500_050 Hb_000173_170--Hb_065500_050 Hb_000956_010 Hb_000956_010 Hb_000173_170--Hb_000956_010 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_001473_130--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_001473_130--Hb_002352_010 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_007229_060--Hb_000983_100 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_007229_060--Hb_001981_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.158 10.1306 11.8681 15.7582 58.8752 96.7777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.656 126.163 142.889 23.5151 10.687

CAGE analysis