Hb_000173_170

Information

Type -
Description -
Location Contig173: 123354-128009
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20660g
description POPTRDRAFT_420512; hypothetical protein
nr
ID XP_012069519.1
description PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
swissprot
ID Q9C0Y8
description UPF0613 protein PB24D3.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.06c PE=3 SV=1
trembl
ID A0A067KV56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02099 PE=4 SV=1
Gene Ontology
ID GO:0009507
description upf0613 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16426: 123420-127976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_170 0.0 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
2 Hb_007760_030 0.0588812842 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
3 Hb_007152_020 0.064231025 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
4 Hb_001191_100 0.0773655214 - - F-actin capping protein beta subunit [Populus trichocarpa]
5 Hb_002326_030 0.0792577942 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_065500_050 0.0806895472 - - lipoate-protein ligase B, putative [Ricinus communis]
7 Hb_000956_010 0.0825883366 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
8 Hb_001981_090 0.0888375022 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
9 Hb_000029_030 0.0901072682 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
10 Hb_002368_050 0.091046435 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006693_030 0.0911208605 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
12 Hb_000418_180 0.0912265429 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000329_040 0.0941257781 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
14 Hb_001366_230 0.0947092267 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000025_480 0.0949791114 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
16 Hb_000861_040 0.0953686195 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
17 Hb_000856_340 0.0954466293 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
18 Hb_002498_100 0.0960303783 - - bcr-associated protein, bap, putative [Ricinus communis]
19 Hb_026988_020 0.0976209231 - - outward rectifying K+ channel [Hevea brasiliensis]
20 Hb_010402_010 0.1005876573 - - BnaC06g23470D [Brassica napus]

Gene co-expression network

sample Hb_000173_170 Hb_000173_170 Hb_007760_030 Hb_007760_030 Hb_000173_170--Hb_007760_030 Hb_007152_020 Hb_007152_020 Hb_000173_170--Hb_007152_020 Hb_001191_100 Hb_001191_100 Hb_000173_170--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000173_170--Hb_002326_030 Hb_065500_050 Hb_065500_050 Hb_000173_170--Hb_065500_050 Hb_000956_010 Hb_000956_010 Hb_000173_170--Hb_000956_010 Hb_007760_030--Hb_007152_020 Hb_001842_070 Hb_001842_070 Hb_007760_030--Hb_001842_070 Hb_000025_480 Hb_000025_480 Hb_007760_030--Hb_000025_480 Hb_006693_030 Hb_006693_030 Hb_007760_030--Hb_006693_030 Hb_011224_080 Hb_011224_080 Hb_007760_030--Hb_011224_080 Hb_000418_180 Hb_000418_180 Hb_007152_020--Hb_000418_180 Hb_012340_030 Hb_012340_030 Hb_007152_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_007152_020--Hb_000107_390 Hb_007152_020--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_001191_100--Hb_001366_230 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_001191_100--Hb_065500_050 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001366_220 Hb_001366_220 Hb_001191_100--Hb_001366_220 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_024650_020 Hb_024650_020 Hb_065500_050--Hb_024650_020 Hb_003376_120 Hb_003376_120 Hb_065500_050--Hb_003376_120 Hb_065500_050--Hb_000861_040 Hb_065500_050--Hb_002326_030 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000376_050 Hb_000376_050 Hb_000956_010--Hb_000376_050 Hb_000956_010--Hb_006693_030 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.69 17.7308 33.4534 29.2133 148.329 170.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
170.856 182.646 229.609 30.4586 21.1137

CAGE analysis