Hb_007152_020

Information

Type -
Description -
Location Contig7152: 44759-53429
Sequence    

Annotation

kegg
ID rcu:RCOM_0601710
description hypothetical protein
nr
ID XP_012079197.1
description PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
swissprot
ID Q338N2
description Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=3 SV=2
trembl
ID A0A067KI05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12361 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55432: 44686-50112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007152_020 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
2 Hb_000173_170 0.064231025 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
3 Hb_007760_030 0.071252101 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
4 Hb_000418_180 0.0784123573 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012340_030 0.0794172432 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
6 Hb_000107_390 0.0822499963 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
7 Hb_000956_010 0.086463382 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
8 Hb_001823_100 0.0873287314 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
9 Hb_000417_180 0.0892922488 - - 60S ribosomal protein L11, putative [Ricinus communis]
10 Hb_000017_120 0.0899503271 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
11 Hb_000856_340 0.0922784533 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
12 Hb_000975_290 0.0926109375 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
13 Hb_027472_180 0.0943049775 - - hypothetical protein L484_016229 [Morus notabilis]
14 Hb_002603_100 0.0943520944 - - ATATH9, putative [Ricinus communis]
15 Hb_004108_050 0.0945909006 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
16 Hb_168918_020 0.0956579824 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_002368_050 0.096332094 - - conserved hypothetical protein [Ricinus communis]
18 Hb_023386_080 0.0981454364 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
19 Hb_000676_220 0.0982758464 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_000029_030 0.1013538488 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]

Gene co-expression network

sample Hb_007152_020 Hb_007152_020 Hb_000173_170 Hb_000173_170 Hb_007152_020--Hb_000173_170 Hb_007760_030 Hb_007760_030 Hb_007152_020--Hb_007760_030 Hb_000418_180 Hb_000418_180 Hb_007152_020--Hb_000418_180 Hb_012340_030 Hb_012340_030 Hb_007152_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_007152_020--Hb_000107_390 Hb_000956_010 Hb_000956_010 Hb_007152_020--Hb_000956_010 Hb_000173_170--Hb_007760_030 Hb_001191_100 Hb_001191_100 Hb_000173_170--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000173_170--Hb_002326_030 Hb_065500_050 Hb_065500_050 Hb_000173_170--Hb_065500_050 Hb_000173_170--Hb_000956_010 Hb_001842_070 Hb_001842_070 Hb_007760_030--Hb_001842_070 Hb_000025_480 Hb_000025_480 Hb_007760_030--Hb_000025_480 Hb_006693_030 Hb_006693_030 Hb_007760_030--Hb_006693_030 Hb_011224_080 Hb_011224_080 Hb_007760_030--Hb_011224_080 Hb_000676_220 Hb_000676_220 Hb_000418_180--Hb_000676_220 Hb_000412_110 Hb_000412_110 Hb_000418_180--Hb_000412_110 Hb_000418_180--Hb_000107_390 Hb_000500_130 Hb_000500_130 Hb_000418_180--Hb_000500_130 Hb_000418_180--Hb_000173_170 Hb_168918_020 Hb_168918_020 Hb_012340_030--Hb_168918_020 Hb_001823_100 Hb_001823_100 Hb_012340_030--Hb_001823_100 Hb_012340_030--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_118419_020 Hb_118419_020 Hb_012340_030--Hb_118419_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000376_050 Hb_000376_050 Hb_000956_010--Hb_000376_050 Hb_000956_010--Hb_006693_030 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.0682 8.87493 18.5247 10.356 59.5126 59.2977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.5296 62.1281 68.9658 14.3072 4.59858

CAGE analysis