Hb_001823_100

Information

Type -
Description -
Location Contig1823: 83143-85930
Sequence    

Annotation

kegg
ID vvi:100250021
description probable ribosome biogenesis protein RLP24
nr
ID XP_002268489.1
description PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
swissprot
ID O22165
description Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1
trembl
ID D7TJ26
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03850 PE=4 SV=1
Gene Ontology
ID GO:0005840
description probable ribosome biogenesis protein rlp24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17771: 83021-85967 , PASA_asmbl_17772: 85341-85863
cDNA
(Sanger)
(ID:Location)		 003_H21.ab1: 83247-85967 , 015_E20.ab1: 83253-85930 , 031_F18.ab1: 83276-85967 , 049_N15.ab1: 83303-85930

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001823_100 0.0 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
2 Hb_012340_030 0.0550997721 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
3 Hb_001609_030 0.0765618608 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
4 Hb_001274_030 0.0839293521 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
5 Hb_000165_030 0.0862584145 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
6 Hb_000017_120 0.087287111 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
7 Hb_007152_020 0.0873287314 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
8 Hb_000975_290 0.0885727608 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_006447_010 0.0906953319 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
10 Hb_001030_120 0.092616979 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
11 Hb_001913_010 0.0928888617 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
12 Hb_168918_020 0.0932720231 - - pectin acetylesterase, putative [Ricinus communis]
13 Hb_005062_070 0.0936425213 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
14 Hb_000162_090 0.0939943544 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
15 Hb_168707_030 0.0941796481 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
16 Hb_009111_050 0.0944231219 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
17 Hb_000749_150 0.0945080288 - - -
18 Hb_001840_080 0.0955819872 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
19 Hb_008453_150 0.0957489994 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
20 Hb_003642_060 0.0961589151 - - hypothetical protein RCOM_1189860 [Ricinus communis]

Gene co-expression network

sample Hb_001823_100 Hb_001823_100 Hb_012340_030 Hb_012340_030 Hb_001823_100--Hb_012340_030 Hb_001609_030 Hb_001609_030 Hb_001823_100--Hb_001609_030 Hb_001274_030 Hb_001274_030 Hb_001823_100--Hb_001274_030 Hb_000165_030 Hb_000165_030 Hb_001823_100--Hb_000165_030 Hb_000017_120 Hb_000017_120 Hb_001823_100--Hb_000017_120 Hb_007152_020 Hb_007152_020 Hb_001823_100--Hb_007152_020 Hb_168918_020 Hb_168918_020 Hb_012340_030--Hb_168918_020 Hb_000107_390 Hb_000107_390 Hb_012340_030--Hb_000107_390 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_118419_020 Hb_118419_020 Hb_012340_030--Hb_118419_020 Hb_011794_070 Hb_011794_070 Hb_001609_030--Hb_011794_070 Hb_000200_210 Hb_000200_210 Hb_001609_030--Hb_000200_210 Hb_001609_030--Hb_012340_030 Hb_000975_290 Hb_000975_290 Hb_001609_030--Hb_000975_290 Hb_000329_040 Hb_000329_040 Hb_001609_030--Hb_000329_040 Hb_001913_010 Hb_001913_010 Hb_001274_030--Hb_001913_010 Hb_000162_090 Hb_000162_090 Hb_001274_030--Hb_000162_090 Hb_000803_150 Hb_000803_150 Hb_001274_030--Hb_000803_150 Hb_007951_050 Hb_007951_050 Hb_001274_030--Hb_007951_050 Hb_000787_110 Hb_000787_110 Hb_001274_030--Hb_000787_110 Hb_000165_030--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_000017_120--Hb_002272_250 Hb_000173_170 Hb_000173_170 Hb_007152_020--Hb_000173_170 Hb_007760_030 Hb_007760_030 Hb_007152_020--Hb_007760_030 Hb_000418_180 Hb_000418_180 Hb_007152_020--Hb_000418_180 Hb_007152_020--Hb_012340_030 Hb_007152_020--Hb_000107_390 Hb_000956_010 Hb_000956_010 Hb_007152_020--Hb_000956_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.006 26.5088 38.324 24.6172 83.2855 141.353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.6636 104.233 123.173 24.6583 19.6365

CAGE analysis