Hb_001609_030

Information

Type -
Description -
Location Contig1609: 23346-26850
Sequence    

Annotation

kegg
ID rcu:RCOM_0455870
description lipid binding protein, putative
nr
ID XP_012065195.1
description PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
swissprot
ID F4JSE7
description Protein ENHANCED DISEASE RESISTANCE 2 OS=Arabidopsis thaliana GN=EDR2 PE=2 SV=1
trembl
ID A0A067L9F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20873 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14403: 23931-24563 , PASA_asmbl_14404: 24969-25178 , PASA_asmbl_14406: 25955-26834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001609_030 0.0 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
2 Hb_001823_100 0.0765618608 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
3 Hb_011794_070 0.0837935491 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
4 Hb_000200_210 0.0938764239 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012340_030 0.0980686991 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
6 Hb_000975_290 0.0985073595 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
7 Hb_000329_040 0.1031075289 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
8 Hb_001243_050 0.1048264131 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
9 Hb_000883_050 0.1056111818 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
10 Hb_004899_320 0.105962495 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
11 Hb_000260_080 0.106095561 - - thioredoxin H-type 1 [Hevea brasiliensis]
12 Hb_018133_060 0.1066606082 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
13 Hb_000048_050 0.1077330541 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
14 Hb_001274_030 0.1089545647 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
15 Hb_002749_100 0.1096335481 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
16 Hb_002890_280 0.1108178134 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
17 Hb_023386_080 0.1117429014 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
18 Hb_000173_170 0.111903632 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
19 Hb_001913_010 0.1128608939 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
20 Hb_001427_120 0.1132482293 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]

Gene co-expression network

sample Hb_001609_030 Hb_001609_030 Hb_001823_100 Hb_001823_100 Hb_001609_030--Hb_001823_100 Hb_011794_070 Hb_011794_070 Hb_001609_030--Hb_011794_070 Hb_000200_210 Hb_000200_210 Hb_001609_030--Hb_000200_210 Hb_012340_030 Hb_012340_030 Hb_001609_030--Hb_012340_030 Hb_000975_290 Hb_000975_290 Hb_001609_030--Hb_000975_290 Hb_000329_040 Hb_000329_040 Hb_001609_030--Hb_000329_040 Hb_001823_100--Hb_012340_030 Hb_001274_030 Hb_001274_030 Hb_001823_100--Hb_001274_030 Hb_000165_030 Hb_000165_030 Hb_001823_100--Hb_000165_030 Hb_000017_120 Hb_000017_120 Hb_001823_100--Hb_000017_120 Hb_007152_020 Hb_007152_020 Hb_001823_100--Hb_007152_020 Hb_011794_070--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_011794_070--Hb_000260_080 Hb_000703_140 Hb_000703_140 Hb_011794_070--Hb_000703_140 Hb_000883_050 Hb_000883_050 Hb_011794_070--Hb_000883_050 Hb_022250_040 Hb_022250_040 Hb_011794_070--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_011794_070--Hb_004108_230 Hb_000500_130 Hb_000500_130 Hb_000200_210--Hb_000500_130 Hb_004297_100 Hb_004297_100 Hb_000200_210--Hb_004297_100 Hb_006447_010 Hb_006447_010 Hb_000200_210--Hb_006447_010 Hb_001019_090 Hb_001019_090 Hb_000200_210--Hb_001019_090 Hb_125000_010 Hb_125000_010 Hb_000200_210--Hb_125000_010 Hb_003874_020 Hb_003874_020 Hb_000200_210--Hb_003874_020 Hb_168918_020 Hb_168918_020 Hb_012340_030--Hb_168918_020 Hb_000107_390 Hb_000107_390 Hb_012340_030--Hb_000107_390 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_118419_020 Hb_118419_020 Hb_012340_030--Hb_118419_020 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_133271_020 Hb_133271_020 Hb_000975_290--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_000975_290--Hb_158092_070 Hb_001030_120 Hb_001030_120 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020 Hb_000329_040--Hb_000260_080 Hb_023386_080 Hb_023386_080 Hb_000329_040--Hb_023386_080 Hb_000376_050 Hb_000376_050 Hb_000329_040--Hb_000376_050 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.498 13.7032 23.0037 17.9412 32.3424 80.9117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.6788 78.3282 76.5742 13.6017 10.9277

CAGE analysis