Hb_001019_090

Information

Type -
Description -
Location Contig1019: 118125-118765
Sequence    

Annotation

kegg
ID cic:CICLE_v10009973mg
description hypothetical protein
nr
ID XP_012078715.1
description PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13281 PE=4 SV=1
Gene Ontology
ID GO:0005747
description PREDICTED: uncharacterized protein LOC105639312 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00922: 117964-118720 , PASA_asmbl_00923: 118064-118397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_090 0.0 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
2 Hb_004297_100 0.0582583236 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
3 Hb_007166_050 0.0621478092 - - -
4 Hb_000617_320 0.0629418559 - - 40S ribosomal protein S21B [Hevea brasiliensis]
5 Hb_000152_430 0.0643058075 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
6 Hb_001754_150 0.0677875326 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
7 Hb_000483_160 0.0705589144 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
8 Hb_024650_050 0.0720408115 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
9 Hb_000189_530 0.0730059723 - - 40S ribosomal protein S24B [Hevea brasiliensis]
10 Hb_118977_020 0.0737684356 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
11 Hb_001804_040 0.0750757183 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000260_050 0.0785363687 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
13 Hb_011161_040 0.0791036609 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
14 Hb_000200_210 0.079179227 - - conserved hypothetical protein [Ricinus communis]
15 Hb_118419_020 0.0820450675 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
16 Hb_001437_040 0.0824927299 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
17 Hb_000316_110 0.0828919265 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
18 Hb_000089_130 0.0843091942 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
19 Hb_006569_020 0.0847120277 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
20 Hb_005611_010 0.0858098598 - - PREDICTED: protein prune homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001019_090 Hb_001019_090 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_004297_100--Hb_000483_160 Hb_005611_010 Hb_005611_010 Hb_004297_100--Hb_005611_010 Hb_000200_210 Hb_000200_210 Hb_004297_100--Hb_000200_210 Hb_004297_100--Hb_000617_320 Hb_023732_070 Hb_023732_070 Hb_004297_100--Hb_023732_070 Hb_003086_110 Hb_003086_110 Hb_007166_050--Hb_003086_110 Hb_007166_050--Hb_000617_320 Hb_118977_020 Hb_118977_020 Hb_007166_050--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_000617_320--Hb_118977_020 Hb_000617_320--Hb_003086_110 Hb_011139_020 Hb_011139_020 Hb_000152_430--Hb_011139_020 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_025193_050 Hb_025193_050 Hb_000152_430--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_000152_430--Hb_024650_050 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_002477_240 Hb_002477_240 Hb_001754_150--Hb_002477_240 Hb_001804_040 Hb_001804_040 Hb_001754_150--Hb_001804_040 Hb_000260_050 Hb_000260_050 Hb_001754_150--Hb_000260_050 Hb_042202_010 Hb_042202_010 Hb_001754_150--Hb_042202_010 Hb_000392_270 Hb_000392_270 Hb_001754_150--Hb_000392_270 Hb_000483_160--Hb_000260_050 Hb_000417_110 Hb_000417_110 Hb_000483_160--Hb_000417_110 Hb_000483_160--Hb_002477_240 Hb_004899_220 Hb_004899_220 Hb_000483_160--Hb_004899_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95169 0.95716 0.766989 1.22651 4.34599 6.24678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74026 7.23822 3.16702 1.09319 0.436285

CAGE analysis