Hb_024650_050

Information

Type -
Description -
Location Contig24650: 55748-64710
Sequence    

Annotation

kegg
ID rcu:RCOM_1152060
description ribosomal RNA methyltransferase, putative
nr
ID XP_002531352.1
description ribosomal RNA methyltransferase, putative [Ricinus communis]
swissprot
ID Q22031
description Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
trembl
ID B9SZD3
description Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Ricinus communis GN=RCOM_1152060 PE=3 SV=1
Gene Ontology
ID GO:0005737
description trna (cytidine guanosine -2 -o)-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024650_050 0.0 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
2 Hb_011139_020 0.0663495536 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
3 Hb_025193_050 0.0679679629 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
4 Hb_000015_210 0.0693008588 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
5 Hb_001019_090 0.0720408115 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
6 Hb_000152_430 0.073110352 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
7 Hb_012515_010 0.0736417699 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
8 Hb_004595_020 0.0828471034 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
9 Hb_004724_100 0.0836536737 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
10 Hb_011161_040 0.085628457 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
11 Hb_118419_020 0.0870136946 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
12 Hb_001754_150 0.0886945704 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
13 Hb_000483_160 0.0910535276 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
14 Hb_004297_100 0.0926647101 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
15 Hb_000465_060 0.0933668546 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
16 Hb_000617_320 0.0944101362 - - 40S ribosomal protein S21B [Hevea brasiliensis]
17 Hb_004899_220 0.0944759088 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
18 Hb_000189_530 0.0949299836 - - 40S ribosomal protein S24B [Hevea brasiliensis]
19 Hb_000365_380 0.0952948593 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002477_240 0.0969569646 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]

Gene co-expression network

sample Hb_024650_050 Hb_024650_050 Hb_011139_020 Hb_011139_020 Hb_024650_050--Hb_011139_020 Hb_025193_050 Hb_025193_050 Hb_024650_050--Hb_025193_050 Hb_000015_210 Hb_000015_210 Hb_024650_050--Hb_000015_210 Hb_001019_090 Hb_001019_090 Hb_024650_050--Hb_001019_090 Hb_000152_430 Hb_000152_430 Hb_024650_050--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_024650_050--Hb_012515_010 Hb_011139_020--Hb_000152_430 Hb_011139_020--Hb_012515_010 Hb_011139_020--Hb_025193_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_025193_050--Hb_012515_010 Hb_025193_050--Hb_004595_020 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_000317_430 Hb_000317_430 Hb_000015_210--Hb_000317_430 Hb_000015_210--Hb_025193_050 Hb_004724_100 Hb_004724_100 Hb_000015_210--Hb_004724_100 Hb_000035_380 Hb_000035_380 Hb_000015_210--Hb_000035_380 Hb_000015_210--Hb_004595_020 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_000465_060 Hb_000465_060 Hb_012515_010--Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_012515_010--Hb_001584_070 Hb_012515_010--Hb_004595_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.01032 0.352067 0.66777 0.563363 2.26308 4.30634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.46425 4.83539 2.05249 0.909875 0.550737

CAGE analysis