Hb_001840_120

Information

Type -
Description -
Location Contig1840: 210432-213036
Sequence    

Annotation

kegg
ID sly:101245002
description uncharacterized LOC101245002
nr
ID XP_009779573.1
description PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID K4B283
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g105130.2 PE=4 SV=1
Gene Ontology
ID GO:0005634
description skip interacting protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001840_120 0.0 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
2 Hb_004595_020 0.0562496853 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
3 Hb_011139_020 0.0779503384 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
4 Hb_012515_010 0.0832293339 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
5 Hb_000465_060 0.0855697929 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
6 Hb_000928_240 0.0861881155 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
7 Hb_025193_050 0.0865386195 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
8 Hb_171900_050 0.0908339001 - - conserved hypothetical protein [Ricinus communis]
9 Hb_143629_230 0.0911712908 - - ring finger, putative [Ricinus communis]
10 Hb_000580_080 0.0913637002 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
11 Hb_011465_040 0.092111603 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
12 Hb_012338_010 0.0966771423 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000152_430 0.0974498487 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
14 Hb_005701_020 0.0979007461 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
15 Hb_005997_010 0.0992773305 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
16 Hb_024650_050 0.0993576697 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
17 Hb_003927_130 0.0997446226 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
18 Hb_001235_210 0.1001780903 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000479_180 0.1015149842 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001383_060 0.1023456902 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_001840_120 Hb_001840_120 Hb_004595_020 Hb_004595_020 Hb_001840_120--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_001840_120--Hb_011139_020 Hb_012515_010 Hb_012515_010 Hb_001840_120--Hb_012515_010 Hb_000465_060 Hb_000465_060 Hb_001840_120--Hb_000465_060 Hb_000928_240 Hb_000928_240 Hb_001840_120--Hb_000928_240 Hb_025193_050 Hb_025193_050 Hb_001840_120--Hb_025193_050 Hb_004595_020--Hb_012515_010 Hb_004595_020--Hb_011139_020 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_004595_020--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011139_020--Hb_000152_430 Hb_011139_020--Hb_012515_010 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_012515_010--Hb_025193_050 Hb_012515_010--Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_012515_010--Hb_001584_070 Hb_012515_010--Hb_024650_050 Hb_000465_060--Hb_001584_070 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_000928_240--Hb_001824_070 Hb_003878_190 Hb_003878_190 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000318_380 Hb_000318_380 Hb_000928_240--Hb_000318_380 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62275 0.470906 1.06616 0.635532 3.69452 5.35482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72726 7.34834 3.80139 1.91359 1.24719

CAGE analysis