Hb_004595_020

Information

Type -
Description -
Location Contig4595: 34329-39001
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09240g
description POPTRDRAFT_558668; hypothetical protein
nr
ID XP_012072842.1
description PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
swissprot
ID P57742
description Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=2 SV=1
trembl
ID A0A067L0B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05973 PE=4 SV=1
Gene Ontology
ID GO:0016272
description probable prefoldin subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43588: 34280-38991 , PASA_asmbl_43589: 37776-38106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004595_020 0.0 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
2 Hb_001840_120 0.0562496853 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
3 Hb_012515_010 0.0587796851 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
4 Hb_011139_020 0.0675108054 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
5 Hb_000465_060 0.0701289824 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
6 Hb_000479_180 0.0703051348 - - conserved hypothetical protein [Ricinus communis]
7 Hb_025193_050 0.0704186029 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
8 Hb_005997_010 0.0722095225 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
9 Hb_000371_080 0.0749806134 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
10 Hb_000928_240 0.0783364109 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
11 Hb_001235_070 0.08093295 - - conserved hypothetical protein [Ricinus communis]
12 Hb_143629_230 0.0824688691 - - ring finger, putative [Ricinus communis]
13 Hb_024650_050 0.0828471034 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
14 Hb_001584_070 0.0829936243 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012338_010 0.0840760468 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001824_070 0.084954515 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
17 Hb_005686_110 0.0859186317 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
18 Hb_000317_340 0.0865531801 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000365_380 0.0880481014 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000300_610 0.0893556894 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004595_020 Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_004595_020--Hb_001840_120 Hb_012515_010 Hb_012515_010 Hb_004595_020--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_004595_020--Hb_011139_020 Hb_000465_060 Hb_000465_060 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_025193_050 Hb_025193_050 Hb_004595_020--Hb_025193_050 Hb_001840_120--Hb_011139_020 Hb_001840_120--Hb_012515_010 Hb_001840_120--Hb_000465_060 Hb_000928_240 Hb_000928_240 Hb_001840_120--Hb_000928_240 Hb_001840_120--Hb_025193_050 Hb_012515_010--Hb_025193_050 Hb_012515_010--Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_012515_010--Hb_001584_070 Hb_012515_010--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_012515_010--Hb_024650_050 Hb_000152_430 Hb_000152_430 Hb_011139_020--Hb_000152_430 Hb_011139_020--Hb_025193_050 Hb_011139_020--Hb_024650_050 Hb_000465_060--Hb_001584_070 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_000479_180--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_000479_180--Hb_000362_210 Hb_000479_180--Hb_012515_010 Hb_000634_050 Hb_000634_050 Hb_000479_180--Hb_000634_050 Hb_000061_330 Hb_000061_330 Hb_000479_180--Hb_000061_330 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
216.68 31.9214 62.0122 55.4347 223.19 344.04
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
423.771 419.558 213.772 131.087 69.1614

CAGE analysis