Hb_000362_210

Information

Type -
Description -
Location Contig362: 206835-210749
Sequence    

Annotation

kegg
ID cit:102628584
description transcription elongation factor 1 homolog
nr
ID XP_012074202.1
description PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
swissprot
ID Q8LHP0
description Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1
trembl
ID A0A067GDH8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034538mg PE=4 SV=1
Gene Ontology
ID GO:0003746
description transcription elongation factor 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37220: 206111-210789
cDNA
(Sanger)
(ID:Location)		 005_M11.ab1: 206111-210789 , 008_E15.ab1: 206114-210681 , 011_E12.ab1: 206111-210789 , 017_F10.ab1: 206114-210745 , 031_K08.ab1: 206111-210789 , 032_A08.ab1: 206111-210789 , 051_G22.ab1: 206111-210789

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_210 0.0 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
2 Hb_002660_160 0.0606710177 - - protein binding protein, putative [Ricinus communis]
3 Hb_007021_020 0.0652561467 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
4 Hb_084849_020 0.0746583635 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_010172_030 0.0774325258 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
6 Hb_000479_180 0.0834611414 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000634_050 0.0836786614 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
8 Hb_002781_020 0.0846067435 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
9 Hb_011139_020 0.0849601799 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
10 Hb_002749_100 0.0861701302 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
11 Hb_011161_040 0.0866170158 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
12 Hb_012515_010 0.088411797 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_001427_120 0.0888860975 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
14 Hb_000333_090 0.0894755821 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
15 Hb_100777_010 0.0908267547 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
16 Hb_002214_050 0.0910702981 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
17 Hb_001369_050 0.0928256964 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
18 Hb_000045_190 0.0944161721 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
19 Hb_002447_030 0.094829701 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
20 Hb_001133_020 0.0951924054 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]

Gene co-expression network

sample Hb_000362_210 Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_002660_160--Hb_007021_020 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_001369_050 Hb_001369_050 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_005686_110 Hb_005686_110 Hb_084849_020--Hb_005686_110 Hb_003050_230 Hb_003050_230 Hb_084849_020--Hb_003050_230 Hb_084849_020--Hb_001427_120 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_010172_030--Hb_000212_260 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_004595_020 Hb_004595_020 Hb_000479_180--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_000479_180--Hb_011139_020 Hb_012515_010 Hb_012515_010 Hb_000479_180--Hb_012515_010 Hb_000479_180--Hb_000634_050 Hb_000061_330 Hb_000061_330 Hb_000479_180--Hb_000061_330 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
734.143 92.5857 145.228 211.398 465.949 1079.27
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1548.33 1564.87 929.053 230.576 120.63

CAGE analysis