Hb_011139_020

Information

Type -
Description -
Location Contig11139: 26282-26506
Sequence    

Annotation

kegg
ID rcu:RCOM_1410030
description Mitochondrial import receptor subunit TOM7-1, putative
nr
ID XP_002523617.1
description Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
swissprot
ID Q9ASY8
description Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana GN=TOM7-1 PE=1 SV=1
trembl
ID B9SC98
description Mitochondrial import receptor subunit TOM7-1, putative OS=Ricinus communis GN=RCOM_1410030 PE=4 SV=1
Gene Ontology
ID GO:0005742
description mitochondrial import receptor subunit tom7-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_O08.ab1: 26047-26570 , 014_J01.ab1: 25837-26521 , 023_H18.ab1: 26098-26564 , 028_O18.ab1: 26118-26478 , 033_B10.ab1: 25836-26516 , 033_E18.ab1: 26076-26545 , 037_D11.ab1: 26075-26564 , 046_A13.ab1: 25913-26545 , 046_J04.ab1: 26075-26564 , 047_P14.ab1: 25838-26516 , 048_B03.ab1: 26103-26572 , 049_P18.ab1: 26073-26545

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011139_020 0.0 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
2 Hb_000152_430 0.0498095371 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
3 Hb_012515_010 0.0601059112 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
4 Hb_025193_050 0.0654370978 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
5 Hb_024650_050 0.0663495536 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
6 Hb_004595_020 0.0675108054 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
7 Hb_001840_120 0.0779503384 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
8 Hb_000089_130 0.0780032888 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
9 Hb_001584_070 0.0782069176 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011161_040 0.0789675073 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
11 Hb_001427_120 0.0802489583 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
12 Hb_000479_180 0.0810507929 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001454_330 0.0812749626 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
14 Hb_000318_380 0.0815967105 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
15 Hb_000563_590 0.0820092968 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
16 Hb_000362_210 0.0849601799 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
17 Hb_000580_080 0.0864541649 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
18 Hb_001718_100 0.0864866407 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_001019_090 0.087132808 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
20 Hb_011465_040 0.0875424112 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011139_020 Hb_011139_020 Hb_000152_430 Hb_000152_430 Hb_011139_020--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_025193_050 Hb_025193_050 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_001019_090 Hb_001019_090 Hb_000152_430--Hb_001019_090 Hb_000152_430--Hb_025193_050 Hb_000152_430--Hb_024650_050 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_012515_010--Hb_025193_050 Hb_000465_060 Hb_000465_060 Hb_012515_010--Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_012515_010--Hb_001584_070 Hb_012515_010--Hb_004595_020 Hb_012515_010--Hb_024650_050 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_004595_020 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_000015_210 Hb_000015_210 Hb_024650_050--Hb_000015_210 Hb_024650_050--Hb_001019_090 Hb_004595_020--Hb_001840_120 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_001840_120--Hb_012515_010 Hb_001840_120--Hb_000465_060 Hb_001840_120--Hb_000928_240 Hb_001840_120--Hb_025193_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1099.76 157.705 180.76 268.239 1028.41 1721.87
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1729.57 2302.08 1162.24 509.029 196.745

CAGE analysis