Hb_012515_010

Information

Type -
Description -
Location Contig12515: 29069-31493
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16030g
description 60S ribosomal protein L30
nr
ID XP_012471468.1
description PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
swissprot
ID O49884
description 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1
trembl
ID A0A0D2RMC7
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G140200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07695: 29200-31554
cDNA
(Sanger)
(ID:Location)		 001_G24.ab1: 29196-31528 , 001_L20.ab1: 29203-31510 , 006_D15.ab1: 29203-31529 , 006_D16.ab1: 29196-31528 , 007_K15.ab1: 29203-31510 , 012_O01.ab1: 29196-31527 , 013_G20.ab1: 29200-31526 , 020_E08.ab1: 29196-31527 , 021_P12.ab1: 29205-31468 , 024_I05.ab1: 29212-31499 , 028_N01.ab1: 29203-31528 , 030_H05.ab1: 29203-31528 , 035_A12.ab1: 29200-31528 , 035_J09.ab1: 29203-31510 , 038_E07.ab1: 29196-31527 , 039_A02.ab1: 29204-31376 , 050_D17.ab1: 29196-31478 , 052_G01.ab1: 29203-31510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012515_010 0.0 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
2 Hb_025193_050 0.0518427405 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
3 Hb_000465_060 0.0581787328 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
4 Hb_001584_070 0.0585891706 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004595_020 0.0587796851 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
6 Hb_011139_020 0.0601059112 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
7 Hb_024650_050 0.0736417699 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
8 Hb_005686_110 0.074397455 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
9 Hb_000317_340 0.0750697935 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000371_080 0.0755092422 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
11 Hb_000417_110 0.0780960814 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
12 Hb_005997_010 0.0784171592 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
13 Hb_000580_080 0.0785698029 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
14 Hb_001383_060 0.0801649475 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_001824_070 0.0816556696 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
16 Hb_000365_380 0.081868361 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000152_430 0.0826118857 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
18 Hb_000634_050 0.0826694232 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
19 Hb_000928_240 0.0829388084 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
20 Hb_023732_070 0.0830358389 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]

Gene co-expression network

sample Hb_012515_010 Hb_012515_010 Hb_025193_050 Hb_025193_050 Hb_012515_010--Hb_025193_050 Hb_000465_060 Hb_000465_060 Hb_012515_010--Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_012515_010--Hb_001584_070 Hb_004595_020 Hb_004595_020 Hb_012515_010--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_012515_010--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_012515_010--Hb_024650_050 Hb_025193_050--Hb_011139_020 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_004595_020 Hb_000152_430 Hb_000152_430 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_000465_060--Hb_001584_070 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001584_070--Hb_001824_070 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_001840_120 Hb_001840_120 Hb_004595_020--Hb_001840_120 Hb_004595_020--Hb_011139_020 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_011139_020--Hb_000152_430 Hb_011139_020--Hb_024650_050 Hb_011139_020--Hb_001840_120 Hb_000015_210 Hb_000015_210 Hb_024650_050--Hb_000015_210 Hb_001019_090 Hb_001019_090 Hb_024650_050--Hb_001019_090 Hb_024650_050--Hb_000152_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
719.233 129.2 243.746 242.462 617.793 1164.26
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1300.44 1546.19 690.126 385.834 127.546

CAGE analysis