Hb_004724_100

Information

Type -
Description -
Location Contig4724: 97655-100209
Sequence    

Annotation

kegg
ID rcu:RCOM_1281610
description 60S ribosomal protein L10a, putative
nr
ID ADR71271.1
description 60S ribosomal protein L10aA [Hevea brasiliensis]
swissprot
ID Q8VZB9
description 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1
trembl
ID I3NMN4
description Ribosomal protein OS=Hevea brasiliensis GN=RPL10aA PE=2 SV=1
Gene Ontology
ID GO:0003723
description 60s ribosomal protein l10a-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44329: 97686-100471 , PASA_asmbl_44331: 97699-97816
cDNA
(Sanger)
(ID:Location)		 040_C05.ab1: 97699-100289 , 040_M24.ab1: 97699-100272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_100 0.0 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
2 Hb_003874_020 0.071228252 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
3 Hb_000510_090 0.0802393178 - - 40S ribosomal protein S15 [Morus notabilis]
4 Hb_000371_080 0.0812223983 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
5 Hb_000175_070 0.082590656 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
6 Hb_024650_050 0.0836536737 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_000200_210 0.0841748978 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000015_210 0.0848196363 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
9 Hb_007166_050 0.0849052058 - - -
10 Hb_005686_110 0.0867656207 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
11 Hb_133271_020 0.0875520984 - - prohibitin, putative [Ricinus communis]
12 Hb_004453_150 0.0898502816 - - BnaC02g13240D [Brassica napus]
13 Hb_003266_050 0.0906005124 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
14 Hb_118419_020 0.090712935 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
15 Hb_000617_320 0.0909014253 - - 40S ribosomal protein S21B [Hevea brasiliensis]
16 Hb_003086_110 0.0913277733 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
17 Hb_025193_050 0.0942495621 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
18 Hb_012515_010 0.0949191759 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
19 Hb_004374_200 0.0953719964 - - putative GMP synthase [Oxybasis rubra]
20 Hb_023732_070 0.0966736088 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]

Gene co-expression network

sample Hb_004724_100 Hb_004724_100 Hb_003874_020 Hb_003874_020 Hb_004724_100--Hb_003874_020 Hb_000510_090 Hb_000510_090 Hb_004724_100--Hb_000510_090 Hb_000371_080 Hb_000371_080 Hb_004724_100--Hb_000371_080 Hb_000175_070 Hb_000175_070 Hb_004724_100--Hb_000175_070 Hb_024650_050 Hb_024650_050 Hb_004724_100--Hb_024650_050 Hb_000200_210 Hb_000200_210 Hb_004724_100--Hb_000200_210 Hb_009767_120 Hb_009767_120 Hb_003874_020--Hb_009767_120 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_000690_080 Hb_000690_080 Hb_003874_020--Hb_000690_080 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_005686_110 Hb_005686_110 Hb_000371_080--Hb_005686_110 Hb_009711_030 Hb_009711_030 Hb_000371_080--Hb_009711_030 Hb_022250_040 Hb_022250_040 Hb_000371_080--Hb_022250_040 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_001824_070 Hb_001824_070 Hb_000371_080--Hb_001824_070 Hb_005997_010 Hb_005997_010 Hb_000371_080--Hb_005997_010 Hb_007193_100 Hb_007193_100 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_011139_020 Hb_011139_020 Hb_024650_050--Hb_011139_020 Hb_025193_050 Hb_025193_050 Hb_024650_050--Hb_025193_050 Hb_000015_210 Hb_000015_210 Hb_024650_050--Hb_000015_210 Hb_001019_090 Hb_001019_090 Hb_024650_050--Hb_001019_090 Hb_000152_430 Hb_000152_430 Hb_024650_050--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_024650_050--Hb_012515_010 Hb_000500_130 Hb_000500_130 Hb_000200_210--Hb_000500_130 Hb_004297_100 Hb_004297_100 Hb_000200_210--Hb_004297_100 Hb_006447_010 Hb_006447_010 Hb_000200_210--Hb_006447_010 Hb_000200_210--Hb_001019_090 Hb_125000_010 Hb_125000_010 Hb_000200_210--Hb_125000_010 Hb_000200_210--Hb_003874_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
473.788 87.6066 101.536 136.093 278.175 664.783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
513.59 549.284 259.413 194.941 70.0131

CAGE analysis