Hb_001279_070

Information

Type -
Description -
Location Contig1279: 101306-103562
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36230g
description POPTRDRAFT_706900; hypothetical protein
nr
ID XP_012071263.1
description PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GJ00
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s36230g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08578: 101294-103562
cDNA
(Sanger)
(ID:Location)		 023_A05.ab1: 101294-103529

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_070 0.0 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
2 Hb_003874_020 0.072966008 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
3 Hb_032202_090 0.0816204953 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
4 Hb_009767_120 0.0838632262 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
5 Hb_000365_380 0.0854611136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002893_060 0.0860896246 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
7 Hb_007432_080 0.0866796843 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
8 Hb_002477_240 0.0877613742 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
9 Hb_001584_070 0.0887912874 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000317_340 0.089107325 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000545_150 0.090543127 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
12 Hb_012515_010 0.0914591816 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_005611_010 0.0922475834 - - PREDICTED: protein prune homolog [Jatropha curcas]
14 Hb_001269_320 0.0928827852 - - 40S ribosomal protein S12A [Hevea brasiliensis]
15 Hb_000483_160 0.0929905361 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
16 Hb_003001_060 0.0940954239 - - wound-responsive family protein [Populus trichocarpa]
17 Hb_093666_020 0.0942175288 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_070986_010 0.0944429192 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
19 Hb_116420_030 0.0944696658 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
20 Hb_001477_110 0.094546159 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_001279_070 Hb_001279_070 Hb_003874_020 Hb_003874_020 Hb_001279_070--Hb_003874_020 Hb_032202_090 Hb_032202_090 Hb_001279_070--Hb_032202_090 Hb_009767_120 Hb_009767_120 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_007432_080 Hb_007432_080 Hb_001279_070--Hb_007432_080 Hb_003874_020--Hb_009767_120 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_000690_080 Hb_000690_080 Hb_003874_020--Hb_000690_080 Hb_000317_340 Hb_000317_340 Hb_032202_090--Hb_000317_340 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_000545_150 Hb_000545_150 Hb_032202_090--Hb_000545_150 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_004117_290 Hb_004117_290 Hb_000365_380--Hb_004117_290 Hb_001584_070 Hb_001584_070 Hb_000365_380--Hb_001584_070 Hb_000365_380--Hb_000317_340 Hb_143629_230 Hb_143629_230 Hb_000365_380--Hb_143629_230 Hb_025193_050 Hb_025193_050 Hb_000365_380--Hb_025193_050 Hb_000365_380--Hb_032202_090 Hb_000465_060 Hb_000465_060 Hb_002893_060--Hb_000465_060 Hb_003001_060 Hb_003001_060 Hb_002893_060--Hb_003001_060 Hb_000025_530 Hb_000025_530 Hb_002893_060--Hb_000025_530 Hb_023732_070 Hb_023732_070 Hb_002893_060--Hb_023732_070 Hb_003878_190 Hb_003878_190 Hb_002893_060--Hb_003878_190 Hb_001824_070 Hb_001824_070 Hb_002893_060--Hb_001824_070 Hb_000163_160 Hb_000163_160 Hb_007432_080--Hb_000163_160 Hb_010180_020 Hb_010180_020 Hb_007432_080--Hb_010180_020 Hb_001279_310 Hb_001279_310 Hb_007432_080--Hb_001279_310 Hb_004306_020 Hb_004306_020 Hb_007432_080--Hb_004306_020 Hb_168054_010 Hb_168054_010 Hb_007432_080--Hb_168054_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0934 1.47126 3.22559 5.05414 8.64762 12.917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1499 18.8174 5.3814 3.75835 1.72178

CAGE analysis