Hb_004944_010

Information

Type -
Description -
Location Contig4944: 38813-46237
Sequence    

Annotation

kegg
ID egr:104423257
description small nuclear ribonucleoprotein E-like
nr
ID ADR71258.1
description small nuclear ribonucleoprotein E [Hevea brasiliensis]
swissprot
ID A1XQR9
description Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1
trembl
ID I3NMM1
description Small nuclear ribonucleoprotein E OS=Hevea brasiliensis GN=SNRPE PE=2 SV=1
Gene Ontology
ID GO:0005681
description small nuclear ribonucleoprotein e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45423: 38709-46223
cDNA
(Sanger)
(ID:Location)		 032_M19.ab1: 38709-46036

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004944_010 0.0 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
2 Hb_000349_060 0.0489447037 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_000690_080 0.05902582 transcription factor TF Family: HB -
4 Hb_141131_010 0.0597129707 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
5 Hb_000457_110 0.0675179894 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
6 Hb_003874_020 0.0730964421 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
7 Hb_003038_030 0.0751123305 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
8 Hb_000465_430 0.0771262696 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
9 Hb_148912_010 0.0798025355 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009767_120 0.0812755043 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
11 Hb_011828_050 0.0812847572 - - 40S ribosomal protein S23, putative [Ricinus communis]
12 Hb_012008_020 0.0838306249 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
13 Hb_004440_050 0.0856704524 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
14 Hb_004545_060 0.0857787872 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
15 Hb_023001_050 0.0877960294 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
16 Hb_004204_200 0.0886373478 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
17 Hb_002411_170 0.0891801035 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
18 Hb_003746_040 0.0894811774 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
19 Hb_000977_130 0.0896323781 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
20 Hb_010180_020 0.0902173882 - - hypothetical protein glysoja_030394 [Glycine soja]

Gene co-expression network

sample Hb_004944_010 Hb_004944_010 Hb_000349_060 Hb_000349_060 Hb_004944_010--Hb_000349_060 Hb_000690_080 Hb_000690_080 Hb_004944_010--Hb_000690_080 Hb_141131_010 Hb_141131_010 Hb_004944_010--Hb_141131_010 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_003874_020 Hb_003874_020 Hb_004944_010--Hb_003874_020 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_009767_120 Hb_009767_120 Hb_000690_080--Hb_009767_120 Hb_000977_130 Hb_000977_130 Hb_000690_080--Hb_000977_130 Hb_000107_050 Hb_000107_050 Hb_000690_080--Hb_000107_050 Hb_000690_080--Hb_141131_010 Hb_000690_080--Hb_003874_020 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_000457_110--Hb_000465_430 Hb_001936_080 Hb_001936_080 Hb_000457_110--Hb_001936_080 Hb_000457_110--Hb_000349_060 Hb_000465_040 Hb_000465_040 Hb_000457_110--Hb_000465_040 Hb_012092_010 Hb_012092_010 Hb_000457_110--Hb_012092_010 Hb_003874_020--Hb_009767_120 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_003038_030--Hb_004545_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
291.614 77.0848 112.261 158.748 235.002 418.608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
243.615 311.887 149.833 72.0026 53.415

CAGE analysis