Hb_000457_110

Information

Type -
Description -
Location Contig457: 139472-139864
Sequence    

Annotation

kegg
ID tcc:TCM_017085
description Mitochondrial ribosomal protein L37 isoform 1
nr
ID XP_007031750.1
description Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EDL2
description Mitochondrial ribosomal protein L37 isoform 1 OS=Theobroma cacao GN=TCM_017085 PE=4 SV=1
Gene Ontology
ID GO:0005840
description mitochondrial ribosomal protein l37 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43457: 138367-140056 , PASA_asmbl_43458: 138407-140165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_110 0.0 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
2 Hb_004944_010 0.0675179894 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
3 Hb_000465_430 0.0717263386 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
4 Hb_001936_080 0.0748743667 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
5 Hb_000349_060 0.0756665187 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_000465_040 0.0806692486 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
7 Hb_012092_010 0.0815004392 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
8 Hb_002495_040 0.082699913 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
9 Hb_003746_040 0.0833343709 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
10 Hb_012008_020 0.0836468936 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
11 Hb_001369_660 0.0844119947 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
12 Hb_001195_760 0.0845850567 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
13 Hb_004440_050 0.0851031126 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
14 Hb_001817_090 0.0858011668 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
15 Hb_000690_080 0.0869794958 transcription factor TF Family: HB -
16 Hb_003683_050 0.0871246615 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
17 Hb_002411_170 0.0871644673 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
18 Hb_105386_010 0.0877459229 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
19 Hb_004545_060 0.0877888526 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
20 Hb_009767_120 0.0879700228 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000457_110 Hb_000457_110 Hb_004944_010 Hb_004944_010 Hb_000457_110--Hb_004944_010 Hb_000465_430 Hb_000465_430 Hb_000457_110--Hb_000465_430 Hb_001936_080 Hb_001936_080 Hb_000457_110--Hb_001936_080 Hb_000349_060 Hb_000349_060 Hb_000457_110--Hb_000349_060 Hb_000465_040 Hb_000465_040 Hb_000457_110--Hb_000465_040 Hb_012092_010 Hb_012092_010 Hb_000457_110--Hb_012092_010 Hb_004944_010--Hb_000349_060 Hb_000690_080 Hb_000690_080 Hb_004944_010--Hb_000690_080 Hb_141131_010 Hb_141131_010 Hb_004944_010--Hb_141131_010 Hb_003874_020 Hb_003874_020 Hb_004944_010--Hb_003874_020 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_000465_430--Hb_012092_010 Hb_002495_040 Hb_002495_040 Hb_000465_430--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_005016_170 Hb_005016_170 Hb_000465_430--Hb_005016_170 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_001936_080--Hb_002495_040 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_001936_080--Hb_000465_430 Hb_001936_080--Hb_012092_010 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000349_060--Hb_000465_430 Hb_000723_090 Hb_000723_090 Hb_000465_040--Hb_000723_090 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_002105_090 Hb_002105_090 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_002391_300 Hb_002391_300 Hb_012092_010--Hb_002391_300 Hb_012092_010--Hb_002495_040 Hb_003030_070 Hb_003030_070 Hb_012092_010--Hb_003030_070 Hb_001195_760 Hb_001195_760 Hb_012092_010--Hb_001195_760
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.232 35.9737 59.2548 76.857 112.895 139.728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.255 149.497 56.1961 31.4111 27.7287

CAGE analysis