Hb_000723_090

Information

Type -
Description -
Location Contig723: 106757-109927
Sequence    

Annotation

kegg
ID rcu:RCOM_1355240
description hypothetical protein
nr
ID XP_002519507.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q2HIM5
description Membrane magnesium transporter OS=Arabidopsis thaliana GN=At5g03345 PE=2 SV=1
trembl
ID B9S0I8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355240 PE=4 SV=1
Gene Ontology
ID GO:0006661
description membrane magnesium transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55755: 106767-110009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000465_040 0.0836013264 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
3 Hb_002105_090 0.0889324329 - - Rab4 [Hevea brasiliensis]
4 Hb_000500_130 0.0894260077 - - small GTPase [Hevea brasiliensis]
5 Hb_000316_110 0.0910767905 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
6 Hb_159558_030 0.0929717518 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
7 Hb_002400_220 0.0992321362 - - Vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_070986_010 0.0996837374 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
9 Hb_003874_020 0.0997123248 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
10 Hb_116420_030 0.1000715275 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
11 Hb_001221_410 0.1018194632 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
12 Hb_004117_290 0.1028357273 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011537_010 0.1029385957 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
14 Hb_000365_380 0.103420887 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003551_020 0.1034238911 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
16 Hb_000808_040 0.1047585089 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
17 Hb_003994_180 0.1049129858 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
18 Hb_000200_210 0.1066761757 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004102_190 0.109463885 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
20 Hb_009711_030 0.1095396394 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000723_090 Hb_000723_090 Hb_000465_040 Hb_000465_040 Hb_000723_090--Hb_000465_040 Hb_002105_090 Hb_002105_090 Hb_000723_090--Hb_002105_090 Hb_000500_130 Hb_000500_130 Hb_000723_090--Hb_000500_130 Hb_000316_110 Hb_000316_110 Hb_000723_090--Hb_000316_110 Hb_159558_030 Hb_159558_030 Hb_000723_090--Hb_159558_030 Hb_002400_220 Hb_002400_220 Hb_000723_090--Hb_002400_220 Hb_000457_110 Hb_000457_110 Hb_000465_040--Hb_000457_110 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_000500_130--Hb_159558_030 Hb_000200_210 Hb_000200_210 Hb_000500_130--Hb_000200_210 Hb_000500_130--Hb_002400_220 Hb_000500_130--Hb_004324_310 Hb_125000_010 Hb_125000_010 Hb_000500_130--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_000500_130--Hb_022250_040 Hb_006569_020 Hb_006569_020 Hb_000316_110--Hb_006569_020 Hb_007166_050 Hb_007166_050 Hb_000316_110--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000316_110--Hb_001019_090 Hb_009711_030 Hb_009711_030 Hb_000316_110--Hb_009711_030 Hb_000316_110--Hb_159558_030 Hb_000316_110--Hb_022250_040 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_159558_030--Hb_006569_020 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_007441_340 Hb_007441_340 Hb_002400_220--Hb_007441_340 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_001269_150 Hb_001269_150 Hb_002400_220--Hb_001269_150 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
191.286 51.1295 48.0977 120.026 199.235 211.926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
302.756 246.182 101.091 39.0714 25.0676

CAGE analysis