Hb_158092_070

Information

Type -
Description -
Location Contig158092: 53364-56277
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16060g
description POPTRDRAFT_712114; ubiquinol-cytochrome C reductase iron-sulfur subunit family protein
nr
ID XP_012088711.1
description PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
swissprot
ID P51133
description Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067JKE1
description Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Jatropha curcas GN=JCGZ_23091 PE=4 SV=1
Gene Ontology
ID GO:0005743
description cytochrome b-c1 complex subunit rieske- mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13917: 53399-56187 , PASA_asmbl_13918: 57259-61321
cDNA
(Sanger)
(ID:Location)		 043_L20.ab1: 53784-56187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_070 0.0 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
2 Hb_133271_020 0.0443727663 - - prohibitin, putative [Ricinus communis]
3 Hb_003052_100 0.0560660547 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_004221_010 0.0609780671 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
5 Hb_003392_040 0.0619028408 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
6 Hb_001030_120 0.0644131459 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_000975_290 0.0649905805 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_004223_130 0.0663755999 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002686_270 0.0674579826 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000032_570 0.0715776234 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
11 Hb_159558_030 0.0729784566 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
12 Hb_002078_450 0.0737714685 - - nuclear transport factor, putative [Ricinus communis]
13 Hb_001124_210 0.0743836899 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002762_060 0.0745428692 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
15 Hb_022250_040 0.0747423671 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
16 Hb_004662_030 0.075638275 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
17 Hb_009711_030 0.0783683705 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
18 Hb_028872_140 0.0784395085 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
19 Hb_007919_050 0.0789779351 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
20 Hb_006447_010 0.0790101386 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_158092_070 Hb_158092_070 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_133271_020--Hb_000975_290 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_001195_690 Hb_001195_690 Hb_003052_100--Hb_001195_690 Hb_002078_450 Hb_002078_450 Hb_003052_100--Hb_002078_450 Hb_004657_020 Hb_004657_020 Hb_003052_100--Hb_004657_020 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_001671_080 Hb_001671_080 Hb_003052_100--Hb_001671_080 Hb_002762_060 Hb_002762_060 Hb_004221_010--Hb_002762_060 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_000169_010 Hb_000169_010 Hb_003392_040--Hb_000169_010 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_003392_040--Hb_000032_570 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_000975_290--Hb_001030_120 Hb_000975_290--Hb_002686_270 Hb_000975_290--Hb_071736_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.64 34.458 21.0959 41.339 88.6025 127.635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.588 102.013 97.8806 53.9635 13.5654

CAGE analysis