Hb_004223_130

Information

Type -
Description -
Location Contig4223: 63384-66223
Sequence    

Annotation

kegg
ID rcu:RCOM_1597410
description hypothetical protein
nr
ID XP_002510517.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID B9R874
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1597410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000017_120 0.0647227748 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
3 Hb_158092_070 0.0663755999 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
4 Hb_001671_080 0.067351766 - - amino acid binding protein, putative [Ricinus communis]
5 Hb_133271_020 0.0697094513 - - prohibitin, putative [Ricinus communis]
6 Hb_001030_120 0.0731594626 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_002272_250 0.0739146274 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000975_290 0.0744196722 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_001604_010 0.0822396297 - - 14-3-3 protein, putative [Ricinus communis]
10 Hb_000029_030 0.0823371721 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
11 Hb_000732_260 0.0838887875 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
12 Hb_000025_200 0.0847479564 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
13 Hb_001776_110 0.0851372477 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
14 Hb_001006_170 0.0871615008 - - Endonuclease V, putative [Ricinus communis]
15 Hb_000032_570 0.0880751227 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
16 Hb_033491_010 0.0896315992 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
17 Hb_005062_070 0.0899872895 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
18 Hb_000190_140 0.0900707762 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
19 Hb_012340_030 0.0903552598 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
20 Hb_000676_220 0.0905137921 - - ADP-ribosylation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004223_130 Hb_004223_130 Hb_000017_120 Hb_000017_120 Hb_004223_130--Hb_000017_120 Hb_158092_070 Hb_158092_070 Hb_004223_130--Hb_158092_070 Hb_001671_080 Hb_001671_080 Hb_004223_130--Hb_001671_080 Hb_133271_020 Hb_133271_020 Hb_004223_130--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_004223_130--Hb_001030_120 Hb_002272_250 Hb_002272_250 Hb_004223_130--Hb_002272_250 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_000017_120--Hb_002272_250 Hb_158092_070--Hb_133271_020 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_001671_080--Hb_003052_100 Hb_001671_080--Hb_158092_070 Hb_001671_080--Hb_000975_290 Hb_007908_020 Hb_007908_020 Hb_001671_080--Hb_007908_020 Hb_001047_020 Hb_001047_020 Hb_001671_080--Hb_001047_020 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_133271_020--Hb_000975_290 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_002272_250--Hb_003392_040 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5107 4.50088 4.74742 4.45439 17.5262 20.1053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8667 14.4107 18.532 8.90231 2.05194

CAGE analysis