Hb_001047_020

Information

Type -
Description -
Location Contig1047: 11672-14661
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01605: 11768-14456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_020 0.0 - - -
2 Hb_001840_080 0.077607476 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
3 Hb_002215_050 0.0788075267 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_000120_800 0.0804502481 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
5 Hb_002686_270 0.0827759318 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000446_090 0.0830051956 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
7 Hb_004046_010 0.0838546493 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
8 Hb_001671_080 0.0864732672 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_000696_110 0.09355883 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
10 Hb_000784_090 0.0960204026 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
11 Hb_003638_140 0.0962670601 - - protein binding protein, putative [Ricinus communis]
12 Hb_000836_360 0.0964065757 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
13 Hb_001030_120 0.0965709735 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
14 Hb_000190_140 0.0967428851 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
15 Hb_003494_240 0.0967455877 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
16 Hb_006452_030 0.0981947634 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_009382_020 0.0989281966 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
18 Hb_007908_020 0.1006007001 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000152_140 0.1018848506 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
20 Hb_005062_070 0.1021938411 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]

Gene co-expression network

sample Hb_001047_020 Hb_001047_020 Hb_001840_080 Hb_001840_080 Hb_001047_020--Hb_001840_080 Hb_002215_050 Hb_002215_050 Hb_001047_020--Hb_002215_050 Hb_000120_800 Hb_000120_800 Hb_001047_020--Hb_000120_800 Hb_002686_270 Hb_002686_270 Hb_001047_020--Hb_002686_270 Hb_000446_090 Hb_000446_090 Hb_001047_020--Hb_000446_090 Hb_004046_010 Hb_004046_010 Hb_001047_020--Hb_004046_010 Hb_001840_080--Hb_000120_800 Hb_001840_080--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_001840_080--Hb_003638_140 Hb_000749_150 Hb_000749_150 Hb_001840_080--Hb_000749_150 Hb_005306_110 Hb_005306_110 Hb_001840_080--Hb_005306_110 Hb_001369_060 Hb_001369_060 Hb_002215_050--Hb_001369_060 Hb_002215_050--Hb_003638_140 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_024714_030 Hb_024714_030 Hb_002215_050--Hb_024714_030 Hb_000120_800--Hb_005306_110 Hb_001017_040 Hb_001017_040 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000009_170 Hb_000009_170 Hb_000120_800--Hb_000009_170 Hb_022137_060 Hb_022137_060 Hb_000120_800--Hb_022137_060 Hb_001030_120 Hb_001030_120 Hb_002686_270--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_002686_270--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_002686_270--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_002686_270--Hb_000975_290 Hb_000152_140 Hb_000152_140 Hb_002686_270--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002686_270--Hb_001454_140 Hb_000661_170 Hb_000661_170 Hb_000446_090--Hb_000661_170 Hb_000446_090--Hb_004046_010 Hb_000190_140 Hb_000190_140 Hb_000446_090--Hb_000190_140 Hb_000110_160 Hb_000110_160 Hb_000446_090--Hb_000110_160 Hb_015306_020 Hb_015306_020 Hb_000446_090--Hb_015306_020 Hb_005062_070 Hb_005062_070 Hb_004046_010--Hb_005062_070 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.923 41.056 15.483 34.5784 91.0963 173.376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.008 72.2849 144.375 36.1432 19.775

CAGE analysis