Hb_001454_140

Information

Type -
Description -
Location Contig1454: 90983-98462
Sequence    

Annotation

kegg
ID rcu:RCOM_0681060
description protein arginine n-methyltransferase, putative (EC:2.1.1.125)
nr
ID XP_002516920.1
description protein arginine n-methyltransferase, putative [Ricinus communis]
swissprot
ID Q7XI75
description Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. japonica GN=CARM1 PE=2 SV=1
trembl
ID B9RT51
description Protein arginine n-methyltransferase, putative OS=Ricinus communis GN=RCOM_0681060 PE=4 SV=1
Gene Ontology
ID GO:0008469
description histone-arginine methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11742: 91161-98662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_140 0.0 - - protein arginine n-methyltransferase, putative [Ricinus communis]
2 Hb_001246_100 0.0656195937 - - Ras-related small GTP-binding family protein [Theobroma cacao]
3 Hb_007101_100 0.0723241944 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
4 Hb_004374_200 0.0751830549 - - putative GMP synthase [Oxybasis rubra]
5 Hb_002686_270 0.0756870284 - - conserved hypothetical protein [Ricinus communis]
6 Hb_033642_010 0.079398421 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
7 Hb_002374_160 0.0801539842 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
8 Hb_000620_080 0.0802301906 - - hypothetical protein F775_32679 [Aegilops tauschii]
9 Hb_000175_070 0.081180654 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
10 Hb_001124_210 0.0812039235 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006447_010 0.0831616524 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
12 Hb_028872_140 0.0832953938 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
13 Hb_004055_140 0.0844625951 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_007193_100 0.0852354493 - - syntaxin family protein [Populus trichocarpa]
15 Hb_005063_040 0.08613256 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
16 Hb_012305_050 0.0882134971 - - unnamed protein product [Coffea canephora]
17 Hb_003777_270 0.0894463075 - - 60S ribosomal protein L3B [Hevea brasiliensis]
18 Hb_001030_120 0.0908645557 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
19 Hb_004128_190 0.0910067256 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
20 Hb_003847_080 0.0915482153 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_140 Hb_001454_140 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_002374_160 Hb_002374_160 Hb_001454_140--Hb_002374_160 Hb_006447_010 Hb_006447_010 Hb_001246_100--Hb_006447_010 Hb_007193_100 Hb_007193_100 Hb_001246_100--Hb_007193_100 Hb_000386_040 Hb_000386_040 Hb_001246_100--Hb_000386_040 Hb_000175_070 Hb_000175_070 Hb_001246_100--Hb_000175_070 Hb_143813_010 Hb_143813_010 Hb_001246_100--Hb_143813_010 Hb_005063_040 Hb_005063_040 Hb_007101_100--Hb_005063_040 Hb_007101_100--Hb_004374_200 Hb_002232_170 Hb_002232_170 Hb_007101_100--Hb_002232_170 Hb_007101_100--Hb_002374_160 Hb_000963_190 Hb_000963_190 Hb_007101_100--Hb_000963_190 Hb_005686_110 Hb_005686_110 Hb_004374_200--Hb_005686_110 Hb_004374_200--Hb_002374_160 Hb_000620_080 Hb_000620_080 Hb_004374_200--Hb_000620_080 Hb_001124_210 Hb_001124_210 Hb_004374_200--Hb_001124_210 Hb_001030_120 Hb_001030_120 Hb_002686_270--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_002686_270--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_002686_270--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_002686_270--Hb_000975_290 Hb_000152_140 Hb_000152_140 Hb_002686_270--Hb_000152_140 Hb_028872_140 Hb_028872_140 Hb_033642_010--Hb_028872_140 Hb_009111_050 Hb_009111_050 Hb_033642_010--Hb_009111_050 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_004128_190 Hb_004128_190 Hb_002374_160--Hb_004128_190 Hb_000245_130 Hb_000245_130 Hb_002374_160--Hb_000245_130 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_000720_120 Hb_000720_120 Hb_002374_160--Hb_000720_120 Hb_002374_160--Hb_002232_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3192 19.4287 6.88161 16.1338 36.636 79.9991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.6926 46.4419 41.475 18.8321 10.747

CAGE analysis