Hb_000714_030

Information

Type -
Description -
Location Contig714: 13012-15073
Sequence    

Annotation

kegg
ID tcc:TCM_043078
description Ureidoglycolate hydrolases
nr
ID KHG25221.1
description Nucleosome assembly [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0PP80
description Nucleosome assembly OS=Gossypium arboreum GN=F383_04345 PE=4 SV=1
Gene Ontology
ID GO:0004848
description ureidoglycolate hydrolases

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55407: 13041-15037
cDNA
(Sanger)
(ID:Location)		 051_J07.ab1: 13125-15026

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_030 0.0 - - Nucleosome assembly [Gossypium arboreum]
2 Hb_000742_140 0.0751189461 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000457_110 0.0896584297 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
4 Hb_009767_120 0.0911169485 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
5 Hb_000933_180 0.0937535847 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
6 Hb_000098_190 0.0940021196 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
7 Hb_000465_040 0.0944936996 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
8 Hb_007763_040 0.0968189977 - - -
9 Hb_000084_290 0.0968747656 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
10 Hb_000670_020 0.0972548593 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
11 Hb_002477_240 0.0975075659 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
12 Hb_001195_760 0.0976669977 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
13 Hb_010368_020 0.100562742 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
14 Hb_001564_130 0.1012677526 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_011360_140 0.1013267886 - - 40S ribosomal protein S19, putative [Ricinus communis]
16 Hb_000462_140 0.1015414314 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
17 Hb_004440_050 0.101931173 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
18 Hb_000154_080 0.1023231966 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
19 Hb_002411_170 0.1023493158 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
20 Hb_001951_140 0.1026647885 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000714_030 Hb_000714_030 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000098_190 Hb_000098_190 Hb_000714_030--Hb_000098_190 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040 Hb_000084_290 Hb_000084_290 Hb_000742_140--Hb_000084_290 Hb_000742_140--Hb_000933_180 Hb_000742_140--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000742_140--Hb_011828_050 Hb_000462_140 Hb_000462_140 Hb_000742_140--Hb_000462_140 Hb_004944_010 Hb_004944_010 Hb_000457_110--Hb_004944_010 Hb_000465_430 Hb_000465_430 Hb_000457_110--Hb_000465_430 Hb_001936_080 Hb_001936_080 Hb_000457_110--Hb_001936_080 Hb_000349_060 Hb_000349_060 Hb_000457_110--Hb_000349_060 Hb_000457_110--Hb_000465_040 Hb_012092_010 Hb_012092_010 Hb_000457_110--Hb_012092_010 Hb_009767_120--Hb_000933_180 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130 Hb_002784_040 Hb_002784_040 Hb_000098_190--Hb_002784_040 Hb_002107_130 Hb_002107_130 Hb_000098_190--Hb_002107_130 Hb_008578_010 Hb_008578_010 Hb_000098_190--Hb_008578_010 Hb_006816_150 Hb_006816_150 Hb_000098_190--Hb_006816_150 Hb_000933_050 Hb_000933_050 Hb_000098_190--Hb_000933_050 Hb_000723_090 Hb_000723_090 Hb_000465_040--Hb_000723_090 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_002105_090 Hb_002105_090 Hb_000465_040--Hb_002105_090 Hb_000465_040--Hb_000084_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.0559 19.3512 32.0973 25.5522 80.0603 67.4082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.1173 103.799 29.7215 13.7393 20.5501

CAGE analysis