Hb_000742_140

Information

Type -
Description -
Location Contig742: 112390-119924
Sequence    

Annotation

kegg
ID rcu:RCOM_1337340
description hypothetical protein
nr
ID XP_002523185.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8RWE8
description GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1
trembl
ID B9SB25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1337340 PE=4 SV=1
Gene Ontology
ID GO:0080048
description gdp-l-galactose phosphorylase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56489: 112741-113156 , PASA_asmbl_56491: 113338-113770 , PASA_asmbl_56494: 116164-119837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000714_030 0.0751189461 - - Nucleosome assembly [Gossypium arboreum]
3 Hb_000084_290 0.0772672786 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
4 Hb_000933_180 0.079048151 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
5 Hb_009767_120 0.0794329049 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
6 Hb_011828_050 0.0822497311 - - 40S ribosomal protein S23, putative [Ricinus communis]
7 Hb_000462_140 0.0868615589 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
8 Hb_000473_040 0.0894695767 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
9 Hb_000457_110 0.0914140144 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
10 Hb_003746_040 0.0918284215 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
11 Hb_002868_010 0.0928839096 - - 60S ribosomal protein L30, putative [Ricinus communis]
12 Hb_011360_140 0.0934196677 - - 40S ribosomal protein S19, putative [Ricinus communis]
13 Hb_004440_050 0.0949942512 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
14 Hb_008578_010 0.095196106 - - 30S ribosomal protein S19, putative [Ricinus communis]
15 Hb_001047_100 0.0952702937 - - 40S ribosomal protein S18, putative [Ricinus communis]
16 Hb_003376_320 0.0955334728 - - 60S ribosomal protein L12A [Hevea brasiliensis]
17 Hb_001946_210 0.0965722197 - - ribosomal protein l7ae, putative [Ricinus communis]
18 Hb_001195_760 0.0966941632 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
19 Hb_000661_250 0.0975282478 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_005332_070 0.0978043685 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_140 Hb_000742_140 Hb_000714_030 Hb_000714_030 Hb_000742_140--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000742_140--Hb_000084_290 Hb_000933_180 Hb_000933_180 Hb_000742_140--Hb_000933_180 Hb_009767_120 Hb_009767_120 Hb_000742_140--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000742_140--Hb_011828_050 Hb_000462_140 Hb_000462_140 Hb_000742_140--Hb_000462_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_000714_030--Hb_009767_120 Hb_000714_030--Hb_000933_180 Hb_000098_190 Hb_000098_190 Hb_000714_030--Hb_000098_190 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040 Hb_025236_040 Hb_025236_040 Hb_000084_290--Hb_025236_040 Hb_000084_290--Hb_009767_120 Hb_000084_290--Hb_011828_050 Hb_000349_060 Hb_000349_060 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010 Hb_000933_180--Hb_009767_120 Hb_011360_140 Hb_011360_140 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_009767_120--Hb_011360_140 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_043302_010 Hb_043302_010 Hb_011828_050--Hb_043302_010 Hb_003746_040 Hb_003746_040 Hb_011828_050--Hb_003746_040 Hb_004944_010 Hb_004944_010 Hb_011828_050--Hb_004944_010 Hb_011828_050--Hb_003874_020 Hb_000661_250 Hb_000661_250 Hb_000462_140--Hb_000661_250 Hb_070739_010 Hb_070739_010 Hb_000462_140--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_003010_030 Hb_003010_030 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.115 13.502 13.7587 10.8906 30.3792 34.7195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0756 46.9967 11.6459 7.03067 8.40417

CAGE analysis