Hb_002983_010

Information

Type -
Description -
Location Contig2983: 9752-11155
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08050g
description POPTRDRAFT_668368; F-box family protein
nr
ID XP_002323765.1
description F-box family protein [Populus trichocarpa]
swissprot
ID Q3EC97
description F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14 PE=2 SV=1
trembl
ID B9IJF9
description F-box family protein OS=Populus trichocarpa GN=POPTR_0017s08050g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31172: 8855-11360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_010 0.0 - - F-box family protein [Populus trichocarpa]
2 Hb_000780_060 0.0729357805 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
3 Hb_000084_290 0.0906531438 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
4 Hb_003687_110 0.0943972304 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
5 Hb_000349_060 0.1010880607 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_003939_080 0.1031810948 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001369_660 0.1070968482 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
8 Hb_000457_110 0.107645784 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
9 Hb_000742_140 0.1100693868 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007441_210 0.1105522395 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
11 Hb_002868_010 0.1105940771 - - 60S ribosomal protein L30, putative [Ricinus communis]
12 Hb_000473_040 0.1123610343 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
13 Hb_003376_320 0.1130890036 - - 60S ribosomal protein L12A [Hevea brasiliensis]
14 Hb_135545_010 0.1140520738 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_004944_010 0.1163670414 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
16 Hb_000000_160 0.1164535063 - - PREDICTED: membrin-11 [Jatropha curcas]
17 Hb_004440_050 0.1193696001 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
18 Hb_003038_030 0.11989554 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
19 Hb_000042_300 0.1213060867 - - -
20 Hb_000101_270 0.121433491 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002983_010 Hb_002983_010 Hb_000780_060 Hb_000780_060 Hb_002983_010--Hb_000780_060 Hb_000084_290 Hb_000084_290 Hb_002983_010--Hb_000084_290 Hb_003687_110 Hb_003687_110 Hb_002983_010--Hb_003687_110 Hb_000349_060 Hb_000349_060 Hb_002983_010--Hb_000349_060 Hb_003939_080 Hb_003939_080 Hb_002983_010--Hb_003939_080 Hb_001369_660 Hb_001369_660 Hb_002983_010--Hb_001369_660 Hb_000780_060--Hb_000349_060 Hb_001358_030 Hb_001358_030 Hb_000780_060--Hb_001358_030 Hb_001301_160 Hb_001301_160 Hb_000780_060--Hb_001301_160 Hb_003038_030 Hb_003038_030 Hb_000780_060--Hb_003038_030 Hb_000060_040 Hb_000060_040 Hb_000780_060--Hb_000060_040 Hb_000742_140 Hb_000742_140 Hb_000084_290--Hb_000742_140 Hb_025236_040 Hb_025236_040 Hb_000084_290--Hb_025236_040 Hb_009767_120 Hb_009767_120 Hb_000084_290--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000084_290--Hb_011828_050 Hb_000084_290--Hb_000349_060 Hb_002874_190 Hb_002874_190 Hb_003687_110--Hb_002874_190 Hb_165132_010 Hb_165132_010 Hb_003687_110--Hb_165132_010 Hb_010180_020 Hb_010180_020 Hb_003687_110--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_003687_110--Hb_001604_080 Hb_002007_060 Hb_002007_060 Hb_003687_110--Hb_002007_060 Hb_002411_170 Hb_002411_170 Hb_003687_110--Hb_002411_170 Hb_004944_010 Hb_004944_010 Hb_000349_060--Hb_004944_010 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_002868_010 Hb_002868_010 Hb_003939_080--Hb_002868_010 Hb_001512_070 Hb_001512_070 Hb_003939_080--Hb_001512_070 Hb_001946_210 Hb_001946_210 Hb_003939_080--Hb_001946_210 Hb_011360_140 Hb_011360_140 Hb_003939_080--Hb_011360_140 Hb_003939_080--Hb_002007_060 Hb_001828_090 Hb_001828_090 Hb_003939_080--Hb_001828_090 Hb_004440_050 Hb_004440_050 Hb_001369_660--Hb_004440_050 Hb_000163_160 Hb_000163_160 Hb_001369_660--Hb_000163_160 Hb_168054_010 Hb_168054_010 Hb_001369_660--Hb_168054_010 Hb_001369_660--Hb_010180_020 Hb_001369_660--Hb_001604_080 Hb_001369_660--Hb_003687_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4119 7.06811 5.42994 7.43605 9.64324 14.832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2488 18.3532 7.05708 1.29278 1.54911

CAGE analysis