Hb_010128_130

Information

Type -
Description -
Location Contig10128: 84605-88166
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00450g
description hypothetical protein
nr
ID XP_012088820.1
description PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23166 PE=4 SV=1
Gene Ontology
ID GO:0003676
description g patch domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00660: 80068-84974 , PASA_asmbl_00661: 85587-86920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010128_130 0.0 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
2 Hb_001741_140 0.0489511729 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_000107_050 0.0632543478 - - 60S ribosomal protein L9, putative [Ricinus communis]
4 Hb_000933_180 0.0731743526 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
5 Hb_001221_230 0.0744810227 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009767_120 0.0755752773 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
7 Hb_012675_090 0.0783072142 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
8 Hb_004204_200 0.078889763 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
9 Hb_005535_050 0.0789285507 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
10 Hb_003746_040 0.0794560904 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
11 Hb_000905_190 0.0798779083 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
12 Hb_143629_010 0.0811123638 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_002997_170 0.0817450253 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
14 Hb_002272_250 0.0839023864 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_005527_050 0.0848894149 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
16 Hb_000141_060 0.0848900604 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
17 Hb_168918_020 0.0900874549 - - pectin acetylesterase, putative [Ricinus communis]
18 Hb_010810_050 0.0902949625 - - hypothetical protein [Cleome spinosa]
19 Hb_001047_100 0.0904513604 - - 40S ribosomal protein S18, putative [Ricinus communis]
20 Hb_043302_010 0.0912233459 - - ADP,ATP carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010128_130 Hb_010128_130 Hb_001741_140 Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_000905_190 Hb_000905_190 Hb_001741_140--Hb_000905_190 Hb_001741_140--Hb_000107_050 Hb_000107_050--Hb_000933_180 Hb_011794_090 Hb_011794_090 Hb_000107_050--Hb_011794_090 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020 Hb_000690_080 Hb_000690_080 Hb_000107_050--Hb_000690_080 Hb_000933_180--Hb_009767_120 Hb_011360_140 Hb_011360_140 Hb_000933_180--Hb_011360_140 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001214_130 Hb_001214_130 Hb_001221_230--Hb_001214_130 Hb_001221_230--Hb_001741_140 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_009767_120--Hb_000690_080 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_003126_040 Hb_003126_040 Hb_012675_090--Hb_003126_040 Hb_143766_090 Hb_143766_090 Hb_012675_090--Hb_143766_090 Hb_012675_090--Hb_001741_140 Hb_001629_110 Hb_001629_110 Hb_012675_090--Hb_001629_110 Hb_010810_050 Hb_010810_050 Hb_012675_090--Hb_010810_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.6897 7.11127 7.98546 7.05696 28.7743 28.7192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8238 28.7356 13.1713 9.35755 6.14038

CAGE analysis