Hb_010810_050

Information

Type -
Description -
Location Contig10810: 22394-24196
Sequence    

Annotation

kegg
ID mus:103995755
description uncharacterized protein LOC103995755 isoform X1
nr
ID ABD96920.1
description hypothetical protein [Cleome spinosa]
swissprot
ID -
description -
trembl
ID Q1KUR5
description Putative uncharacterized protein OS=Cleome spinosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02467: 6781-24090 , PASA_asmbl_02468: 6781-24090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010810_050 0.0 - - hypothetical protein [Cleome spinosa]
2 Hb_006816_150 0.0789762131 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
3 Hb_001221_230 0.0867706466 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010128_130 0.0902949625 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
5 Hb_012675_090 0.0965347675 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
6 Hb_052135_030 0.097869781 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
7 Hb_005928_060 0.0978831715 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
8 Hb_000035_380 0.0983732492 - - -
9 Hb_001741_140 0.0990239661 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
10 Hb_003126_040 0.1005580521 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000847_070 0.1042528249 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
12 Hb_000322_050 0.1054290155 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
13 Hb_143766_090 0.1057870591 - - 60S ribosomal protein L31B [Hevea brasiliensis]
14 Hb_005527_050 0.1078636383 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
15 Hb_005288_160 0.1083445896 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
16 Hb_003097_150 0.109065536 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
17 Hb_001623_580 0.1090723913 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
18 Hb_002007_250 0.1092079021 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000284_200 0.1103998281 - - -
20 Hb_001369_650 0.1107857431 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]

Gene co-expression network

sample Hb_010810_050 Hb_010810_050 Hb_006816_150 Hb_006816_150 Hb_010810_050--Hb_006816_150 Hb_001221_230 Hb_001221_230 Hb_010810_050--Hb_001221_230 Hb_010128_130 Hb_010128_130 Hb_010810_050--Hb_010128_130 Hb_012675_090 Hb_012675_090 Hb_010810_050--Hb_012675_090 Hb_052135_030 Hb_052135_030 Hb_010810_050--Hb_052135_030 Hb_005928_060 Hb_005928_060 Hb_010810_050--Hb_005928_060 Hb_002784_040 Hb_002784_040 Hb_006816_150--Hb_002784_040 Hb_008578_010 Hb_008578_010 Hb_006816_150--Hb_008578_010 Hb_000019_230 Hb_000019_230 Hb_006816_150--Hb_000019_230 Hb_001369_650 Hb_001369_650 Hb_006816_150--Hb_001369_650 Hb_003120_060 Hb_003120_060 Hb_006816_150--Hb_003120_060 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_001221_230--Hb_010128_130 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001214_130 Hb_001214_130 Hb_001221_230--Hb_001214_130 Hb_001741_140 Hb_001741_140 Hb_001221_230--Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_010128_130--Hb_012675_090 Hb_003126_040 Hb_003126_040 Hb_012675_090--Hb_003126_040 Hb_143766_090 Hb_143766_090 Hb_012675_090--Hb_143766_090 Hb_012675_090--Hb_001741_140 Hb_001629_110 Hb_001629_110 Hb_012675_090--Hb_001629_110 Hb_004899_220 Hb_004899_220 Hb_052135_030--Hb_004899_220 Hb_052135_030--Hb_001369_650 Hb_000260_050 Hb_000260_050 Hb_052135_030--Hb_000260_050 Hb_001623_330 Hb_001623_330 Hb_052135_030--Hb_001623_330 Hb_052135_030--Hb_006816_150 Hb_000905_190 Hb_000905_190 Hb_005928_060--Hb_000905_190 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_005928_060--Hb_001214_130 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8139 3.93419 3.47621 2.19155 25.5088 21.2588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1238 22.0707 8.24043 7.11544 4.21806

CAGE analysis