Hb_052135_030

Information

Type -
Description -
Location Contig52135: 24196-26102
Sequence    

Annotation

kegg
ID rcu:RCOM_1000610
description hypothetical protein
nr
ID XP_012084066.1
description PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
swissprot
ID Q9CR41
description Huntingtin-interacting protein K OS=Mus musculus GN=Hypk PE=2 SV=2
trembl
ID A0A067K7W4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18989 PE=4 SV=1
Gene Ontology
ID GO:0005829
description huntingtin-interacting protein k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052135_030 0.0 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
2 Hb_004899_220 0.0849610268 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
3 Hb_001369_650 0.090866595 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
4 Hb_000260_050 0.0944825074 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
5 Hb_010810_050 0.097869781 - - hypothetical protein [Cleome spinosa]
6 Hb_001623_330 0.1021073522 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
7 Hb_006816_150 0.1021472346 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
8 Hb_000977_080 0.1023041183 - - type II inositol 5-phosphatase, putative [Ricinus communis]
9 Hb_119583_010 0.1023643264 - - 60S ribosomal protein L12A [Hevea brasiliensis]
10 Hb_007747_090 0.102802107 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
11 Hb_002477_240 0.1032731997 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
12 Hb_003001_060 0.1043563353 - - wound-responsive family protein [Populus trichocarpa]
13 Hb_004295_020 0.1043948984 - - thioredoxin II-type 1 [Hevea brasiliensis]
14 Hb_000866_300 0.1052229372 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
15 Hb_000270_840 0.105574531 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
16 Hb_006501_150 0.1077305364 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001804_040 0.1084020004 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000045_130 0.1089238954 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
19 Hb_004204_030 0.1109657258 - - unknown [Populus trichocarpa]
20 Hb_000190_060 0.1109843757 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_052135_030 Hb_052135_030 Hb_004899_220 Hb_004899_220 Hb_052135_030--Hb_004899_220 Hb_001369_650 Hb_001369_650 Hb_052135_030--Hb_001369_650 Hb_000260_050 Hb_000260_050 Hb_052135_030--Hb_000260_050 Hb_010810_050 Hb_010810_050 Hb_052135_030--Hb_010810_050 Hb_001623_330 Hb_001623_330 Hb_052135_030--Hb_001623_330 Hb_006816_150 Hb_006816_150 Hb_052135_030--Hb_006816_150 Hb_004899_220--Hb_000260_050 Hb_000483_160 Hb_000483_160 Hb_004899_220--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_004899_220--Hb_000025_530 Hb_007747_090 Hb_007747_090 Hb_004899_220--Hb_007747_090 Hb_011805_080 Hb_011805_080 Hb_004899_220--Hb_011805_080 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_000977_080 Hb_000977_080 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_000260_050--Hb_007747_090 Hb_000260_050--Hb_000483_160 Hb_002477_240 Hb_002477_240 Hb_000260_050--Hb_002477_240 Hb_000260_050--Hb_000977_080 Hb_001754_150 Hb_001754_150 Hb_000260_050--Hb_001754_150 Hb_010810_050--Hb_006816_150 Hb_001221_230 Hb_001221_230 Hb_010810_050--Hb_001221_230 Hb_010128_130 Hb_010128_130 Hb_010810_050--Hb_010128_130 Hb_012675_090 Hb_012675_090 Hb_010810_050--Hb_012675_090 Hb_005928_060 Hb_005928_060 Hb_010810_050--Hb_005928_060 Hb_001623_330--Hb_001369_650 Hb_000866_300 Hb_000866_300 Hb_001623_330--Hb_000866_300 Hb_001623_330--Hb_003001_060 Hb_001623_330--Hb_000392_270 Hb_001623_330--Hb_000977_080 Hb_001623_330--Hb_000045_130 Hb_002784_040 Hb_002784_040 Hb_006816_150--Hb_002784_040 Hb_008578_010 Hb_008578_010 Hb_006816_150--Hb_008578_010 Hb_000019_230 Hb_000019_230 Hb_006816_150--Hb_000019_230 Hb_006816_150--Hb_001369_650 Hb_003120_060 Hb_003120_060 Hb_006816_150--Hb_003120_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6791 2.87673 4.49529 1.83265 22.6971 19.9011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0929 26.7918 8.48516 4.56455 1.53474

CAGE analysis