Hb_011805_080

Information

Type -
Description -
Location Contig11805: 49597-52323
Sequence    

Annotation

kegg
ID vvi:100242357
description uncharacterized LOC100242357
nr
ID XP_002272698.1
description PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7T9S3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05428: 50245-52254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011805_080 0.0 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
2 Hb_003001_060 0.061092694 - - wound-responsive family protein [Populus trichocarpa]
3 Hb_007617_020 0.0735856738 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001369_650 0.0776407956 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
5 Hb_002893_060 0.0795628878 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
6 Hb_007747_090 0.0885686566 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
7 Hb_003878_190 0.0897561463 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
8 Hb_004899_220 0.0904399409 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
9 Hb_001946_210 0.0929716109 - - ribosomal protein l7ae, putative [Ricinus communis]
10 Hb_000487_250 0.0948419008 - - 60S ribosomal protein L27e, putative [Ricinus communis]
11 Hb_000933_180 0.0965090843 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
12 Hb_001235_210 0.098100414 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_002311_350 0.09929206 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
14 Hb_009767_120 0.0996465936 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
15 Hb_000260_050 0.1015353728 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
16 Hb_003640_060 0.1017935813 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_046049_010 0.1021416319 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
18 Hb_001477_110 0.1025570003 - - prohibitin, putative [Ricinus communis]
19 Hb_000483_160 0.1028004557 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
20 Hb_042083_050 0.1044690502 - - 60S ribosomal protein L11, putative [Ricinus communis]

Gene co-expression network

sample Hb_011805_080 Hb_011805_080 Hb_003001_060 Hb_003001_060 Hb_011805_080--Hb_003001_060 Hb_007617_020 Hb_007617_020 Hb_011805_080--Hb_007617_020 Hb_001369_650 Hb_001369_650 Hb_011805_080--Hb_001369_650 Hb_002893_060 Hb_002893_060 Hb_011805_080--Hb_002893_060 Hb_007747_090 Hb_007747_090 Hb_011805_080--Hb_007747_090 Hb_003878_190 Hb_003878_190 Hb_011805_080--Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_003001_060--Hb_002893_060 Hb_003001_060--Hb_001369_650 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003001_060--Hb_000417_110 Hb_000487_250 Hb_000487_250 Hb_007617_020--Hb_000487_250 Hb_001946_210 Hb_001946_210 Hb_007617_020--Hb_001946_210 Hb_002311_350 Hb_002311_350 Hb_007617_020--Hb_002311_350 Hb_002811_230 Hb_002811_230 Hb_007617_020--Hb_002811_230 Hb_169246_010 Hb_169246_010 Hb_007617_020--Hb_169246_010 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_000977_080 Hb_000977_080 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_000465_060 Hb_000465_060 Hb_002893_060--Hb_000465_060 Hb_000025_530 Hb_000025_530 Hb_002893_060--Hb_000025_530 Hb_023732_070 Hb_023732_070 Hb_002893_060--Hb_023732_070 Hb_002893_060--Hb_003878_190 Hb_001824_070 Hb_001824_070 Hb_002893_060--Hb_001824_070 Hb_143813_010 Hb_143813_010 Hb_007747_090--Hb_143813_010 Hb_000260_050 Hb_000260_050 Hb_007747_090--Hb_000260_050 Hb_000318_380 Hb_000318_380 Hb_007747_090--Hb_000318_380 Hb_007747_090--Hb_000045_130 Hb_007747_090--Hb_001369_650 Hb_007747_090--Hb_000977_080 Hb_003878_190--Hb_001824_070 Hb_003878_190--Hb_000392_270 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_003878_190--Hb_000977_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.81 40.883 38.4732 27.7962 122.203 136.638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.51 240.227 51.7854 65.2285 14.6727

CAGE analysis