Hb_002811_230

Information

Type -
Description -
Location Contig2811: 192376-192918
Sequence    

Annotation

kegg
ID rcu:RCOM_1427800
description Mitochondrial import inner membrane translocase subunit tim23, putative
nr
ID XP_012089243.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
swissprot
ID Q9LNQ1
description Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1
trembl
ID A0A067JVV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23482 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim23-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29421: 192259-193232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_230 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
2 Hb_001159_140 0.1019922624 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
3 Hb_007617_020 0.1064180632 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001946_210 0.1085984378 - - ribosomal protein l7ae, putative [Ricinus communis]
5 Hb_000189_270 0.1089022581 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
6 Hb_003641_020 0.1092906881 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
7 Hb_003992_240 0.1108943307 - - -
8 Hb_000879_010 0.1121466445 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
9 Hb_002182_060 0.1128352902 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
10 Hb_000264_090 0.1159285192 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
11 Hb_002311_350 0.1168639962 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
12 Hb_000438_220 0.1176289366 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
13 Hb_000970_010 0.1194196965 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
14 Hb_000487_250 0.120896476 - - 60S ribosomal protein L27e, putative [Ricinus communis]
15 Hb_114893_030 0.1213789739 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
16 Hb_000917_110 0.1236168964 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
17 Hb_000196_050 0.1240129869 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
18 Hb_000200_100 0.1248629607 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
19 Hb_000258_350 0.1249380098 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
20 Hb_005618_140 0.1249639954 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_230 Hb_002811_230 Hb_001159_140 Hb_001159_140 Hb_002811_230--Hb_001159_140 Hb_007617_020 Hb_007617_020 Hb_002811_230--Hb_007617_020 Hb_001946_210 Hb_001946_210 Hb_002811_230--Hb_001946_210 Hb_000189_270 Hb_000189_270 Hb_002811_230--Hb_000189_270 Hb_003641_020 Hb_003641_020 Hb_002811_230--Hb_003641_020 Hb_003992_240 Hb_003992_240 Hb_002811_230--Hb_003992_240 Hb_000866_270 Hb_000866_270 Hb_001159_140--Hb_000866_270 Hb_005357_030 Hb_005357_030 Hb_001159_140--Hb_005357_030 Hb_007590_050 Hb_007590_050 Hb_001159_140--Hb_007590_050 Hb_003126_080 Hb_003126_080 Hb_001159_140--Hb_003126_080 Hb_001766_110 Hb_001766_110 Hb_001159_140--Hb_001766_110 Hb_001259_090 Hb_001259_090 Hb_001159_140--Hb_001259_090 Hb_011805_080 Hb_011805_080 Hb_007617_020--Hb_011805_080 Hb_000487_250 Hb_000487_250 Hb_007617_020--Hb_000487_250 Hb_007617_020--Hb_001946_210 Hb_002311_350 Hb_002311_350 Hb_007617_020--Hb_002311_350 Hb_169246_010 Hb_169246_010 Hb_007617_020--Hb_169246_010 Hb_003939_080 Hb_003939_080 Hb_001946_210--Hb_003939_080 Hb_002868_010 Hb_002868_010 Hb_001946_210--Hb_002868_010 Hb_000101_270 Hb_000101_270 Hb_001946_210--Hb_000101_270 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_001946_210--Hb_002311_350 Hb_004645_050 Hb_004645_050 Hb_000189_270--Hb_004645_050 Hb_000189_270--Hb_002311_350 Hb_000189_270--Hb_000380_190 Hb_001512_070 Hb_001512_070 Hb_000189_270--Hb_001512_070 Hb_000977_080 Hb_000977_080 Hb_000189_270--Hb_000977_080 Hb_002374_490 Hb_002374_490 Hb_000189_270--Hb_002374_490 Hb_012368_020 Hb_012368_020 Hb_003641_020--Hb_012368_020 Hb_000062_650 Hb_000062_650 Hb_003641_020--Hb_000062_650 Hb_001638_260 Hb_001638_260 Hb_003641_020--Hb_001638_260 Hb_000438_220 Hb_000438_220 Hb_003641_020--Hb_000438_220 Hb_001314_100 Hb_001314_100 Hb_003641_020--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_003641_020--Hb_012573_070 Hb_011609_100 Hb_011609_100 Hb_003992_240--Hb_011609_100 Hb_114893_030 Hb_114893_030 Hb_003992_240--Hb_114893_030 Hb_000788_100 Hb_000788_100 Hb_003992_240--Hb_000788_100 Hb_000012_220 Hb_000012_220 Hb_003992_240--Hb_000012_220 Hb_015279_010 Hb_015279_010 Hb_003992_240--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_003992_240--Hb_022425_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.5031 29.6916 7.65696 16.0066 28.2989 26.5706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.513 89.0667 26.8718 16.5927 6.85219

CAGE analysis