Hb_046049_010

Information

Type -
Description -
Location Contig46049: 69-4371
Sequence    

Annotation

kegg
ID rcu:RCOM_0742410
description nucleic acid binding protein, putative (EC:3.1.2.15)
nr
ID XP_012077137.1
description PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
swissprot
ID Q9UNW9
description RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1
trembl
ID A0A067LLH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17222 PE=4 SV=1
Gene Ontology
ID GO:0003723
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046049_010 0.0 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
2 Hb_000917_110 0.0785384429 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
3 Hb_064264_010 0.0812214714 - - hypothetical protein [Zea mays]
4 Hb_004800_230 0.0870775255 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
5 Hb_002868_010 0.087858417 - - 60S ribosomal protein L30, putative [Ricinus communis]
6 Hb_001946_210 0.0879801395 - - ribosomal protein l7ae, putative [Ricinus communis]
7 Hb_002660_080 0.0901015139 - - 60S ribosomal protein L12A [Hevea brasiliensis]
8 Hb_002107_130 0.0915852961 - - protein with unknown function [Ricinus communis]
9 Hb_003939_080 0.0920526914 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000933_180 0.0920804148 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
11 Hb_002233_150 0.0934153164 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
12 Hb_000007_100 0.0939201066 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
13 Hb_001489_060 0.0960290772 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
14 Hb_000101_270 0.0960953395 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
15 Hb_000494_020 0.0963191159 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
16 Hb_001159_140 0.0966844467 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
17 Hb_001184_090 0.0970130628 - - PREDICTED: TIP41-like protein [Jatropha curcas]
18 Hb_002007_300 0.0998073636 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
19 Hb_011970_030 0.1009012058 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
20 Hb_009767_120 0.1013412319 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_046049_010 Hb_046049_010 Hb_000917_110 Hb_000917_110 Hb_046049_010--Hb_000917_110 Hb_064264_010 Hb_064264_010 Hb_046049_010--Hb_064264_010 Hb_004800_230 Hb_004800_230 Hb_046049_010--Hb_004800_230 Hb_002868_010 Hb_002868_010 Hb_046049_010--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_046049_010--Hb_001946_210 Hb_002660_080 Hb_002660_080 Hb_046049_010--Hb_002660_080 Hb_009793_010 Hb_009793_010 Hb_000917_110--Hb_009793_010 Hb_114893_030 Hb_114893_030 Hb_000917_110--Hb_114893_030 Hb_000007_100 Hb_000007_100 Hb_000917_110--Hb_000007_100 Hb_000917_110--Hb_004800_230 Hb_015279_010 Hb_015279_010 Hb_000917_110--Hb_015279_010 Hb_000101_270 Hb_000101_270 Hb_064264_010--Hb_000101_270 Hb_042083_050 Hb_042083_050 Hb_064264_010--Hb_042083_050 Hb_064264_010--Hb_002868_010 Hb_064264_010--Hb_001946_210 Hb_175215_010 Hb_175215_010 Hb_064264_010--Hb_175215_010 Hb_000329_030 Hb_000329_030 Hb_004800_230--Hb_000329_030 Hb_024071_020 Hb_024071_020 Hb_004800_230--Hb_024071_020 Hb_000163_160 Hb_000163_160 Hb_004800_230--Hb_000163_160 Hb_003126_050 Hb_003126_050 Hb_004800_230--Hb_003126_050 Hb_000494_020 Hb_000494_020 Hb_004800_230--Hb_000494_020 Hb_001184_090 Hb_001184_090 Hb_004800_230--Hb_001184_090 Hb_003939_080 Hb_003939_080 Hb_002868_010--Hb_003939_080 Hb_002868_010--Hb_001946_210 Hb_002007_060 Hb_002007_060 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_011360_140 Hb_011360_140 Hb_002868_010--Hb_011360_140 Hb_001512_070 Hb_001512_070 Hb_002868_010--Hb_001512_070 Hb_001946_210--Hb_003939_080 Hb_001946_210--Hb_000101_270 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350 Hb_001358_030 Hb_001358_030 Hb_002660_080--Hb_001358_030 Hb_096563_010 Hb_096563_010 Hb_002660_080--Hb_096563_010 Hb_000056_200 Hb_000056_200 Hb_002660_080--Hb_000056_200 Hb_001226_160 Hb_001226_160 Hb_002660_080--Hb_001226_160 Hb_002226_070 Hb_002226_070 Hb_002660_080--Hb_002226_070 Hb_001489_060 Hb_001489_060 Hb_002660_080--Hb_001489_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52887 1.06256 1.21674 1.54959 2.73928 2.58478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.37147 4.62255 1.44308 1.49458 0.290472

CAGE analysis