Hb_064264_010

Information

Type -
Description -
Location Contig64264: 605-847
Sequence    

Annotation

kegg
ID zma:100194057
description hypothetical protein
nr
ID NP_001132586.1
description hypothetical protein [Zea mays]
swissprot
ID Q43291
description 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2
trembl
ID B4FHA3
description Uncharacterized protein OS=Zea mays GN=LOC100194057 PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l21-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064264_010 0.0 - - hypothetical protein [Zea mays]
2 Hb_046049_010 0.0812214714 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
3 Hb_000101_270 0.0894352228 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
4 Hb_042083_050 0.0938211185 - - 60S ribosomal protein L11, putative [Ricinus communis]
5 Hb_002868_010 0.0943307431 - - 60S ribosomal protein L30, putative [Ricinus communis]
6 Hb_001946_210 0.094477876 - - ribosomal protein l7ae, putative [Ricinus communis]
7 Hb_175215_010 0.0961934834 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
8 Hb_021419_020 0.0969044513 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
9 Hb_003939_080 0.0978178312 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000163_160 0.0981130727 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
11 Hb_128048_010 0.09928207 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
12 Hb_027295_010 0.0999999276 - - 40S ribosomal protein S7, putative [Ricinus communis]
13 Hb_001369_660 0.1008528116 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
14 Hb_001504_020 0.1015721218 - - 40S ribosomal protein S12A [Hevea brasiliensis]
15 Hb_004800_230 0.1022136111 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
16 Hb_000186_190 0.1024824085 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
17 Hb_000917_110 0.1064062393 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
18 Hb_002811_260 0.1109112347 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_002289_120 0.1113392001 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
20 Hb_003878_010 0.1121063492 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]

Gene co-expression network

sample Hb_064264_010 Hb_064264_010 Hb_046049_010 Hb_046049_010 Hb_064264_010--Hb_046049_010 Hb_000101_270 Hb_000101_270 Hb_064264_010--Hb_000101_270 Hb_042083_050 Hb_042083_050 Hb_064264_010--Hb_042083_050 Hb_002868_010 Hb_002868_010 Hb_064264_010--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_064264_010--Hb_001946_210 Hb_175215_010 Hb_175215_010 Hb_064264_010--Hb_175215_010 Hb_000917_110 Hb_000917_110 Hb_046049_010--Hb_000917_110 Hb_004800_230 Hb_004800_230 Hb_046049_010--Hb_004800_230 Hb_046049_010--Hb_002868_010 Hb_046049_010--Hb_001946_210 Hb_002660_080 Hb_002660_080 Hb_046049_010--Hb_002660_080 Hb_003939_080 Hb_003939_080 Hb_000101_270--Hb_003939_080 Hb_000101_270--Hb_001946_210 Hb_000101_270--Hb_002868_010 Hb_070986_010 Hb_070986_010 Hb_000101_270--Hb_070986_010 Hb_000000_160 Hb_000000_160 Hb_000101_270--Hb_000000_160 Hb_027295_010 Hb_027295_010 Hb_042083_050--Hb_027295_010 Hb_000003_160 Hb_000003_160 Hb_042083_050--Hb_000003_160 Hb_000933_180 Hb_000933_180 Hb_042083_050--Hb_000933_180 Hb_002233_150 Hb_002233_150 Hb_042083_050--Hb_002233_150 Hb_011360_140 Hb_011360_140 Hb_042083_050--Hb_011360_140 Hb_002868_010--Hb_003939_080 Hb_002868_010--Hb_001946_210 Hb_002007_060 Hb_002007_060 Hb_002868_010--Hb_002007_060 Hb_002868_010--Hb_000000_160 Hb_002868_010--Hb_011360_140 Hb_001512_070 Hb_001512_070 Hb_002868_010--Hb_001512_070 Hb_001946_210--Hb_003939_080 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350 Hb_128048_010 Hb_128048_010 Hb_175215_010--Hb_128048_010 Hb_009486_150 Hb_009486_150 Hb_175215_010--Hb_009486_150 Hb_001504_020 Hb_001504_020 Hb_175215_010--Hb_001504_020 Hb_004787_060 Hb_004787_060 Hb_175215_010--Hb_004787_060 Hb_021419_020 Hb_021419_020 Hb_175215_010--Hb_021419_020 Hb_000926_300 Hb_000926_300 Hb_175215_010--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1501.37 922.449 1182.84 981.011 1466.79 2046.84
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2084.96 3365.22 752.601 1008.14 128.542

CAGE analysis