Hb_042083_050

Information

Type -
Description -
Location Contig42083: 45488-47418
Sequence    

Annotation

kegg
ID rcu:RCOM_1250160
description 60S ribosomal protein L11, putative
nr
ID XP_002522234.1
description 60S ribosomal protein L11, putative [Ricinus communis]
swissprot
ID P46287
description 60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1
trembl
ID B9S8B5
description 60S ribosomal protein L11, putative OS=Ricinus communis GN=RCOM_1250160 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41581: 45570-47419
cDNA
(Sanger)
(ID:Location)		 008_K11.ab1: 45710-47409 , 016_G10.ab1: 45607-47409 , 017_M02.ab1: 45705-47409 , 017_O12.ab1: 45738-47409 , 037_D04.ab1: 45576-47409 , 041_C12.ab1: 45629-46839 , 042_J03.ab1: 45621-47409 , 042_P15.ab1: 45663-47409 , 045_C10.ab1: 45631-47422 , 046_D03.ab1: 45607-47409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042083_050 0.0 - - 60S ribosomal protein L11, putative [Ricinus communis]
2 Hb_027295_010 0.0680436454 - - 40S ribosomal protein S7, putative [Ricinus communis]
3 Hb_000003_160 0.091095422 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
4 Hb_064264_010 0.0938211185 - - hypothetical protein [Zea mays]
5 Hb_000933_180 0.0950554518 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
6 Hb_002233_150 0.0982302903 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
7 Hb_011360_140 0.0995106841 - - 40S ribosomal protein S19, putative [Ricinus communis]
8 Hb_001369_660 0.1004301456 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
9 Hb_002868_010 0.1026006655 - - 60S ribosomal protein L30, putative [Ricinus communis]
10 Hb_000163_160 0.1027652899 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
11 Hb_002893_060 0.1028176755 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
12 Hb_046049_010 0.1042741748 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
13 Hb_011805_080 0.1044690502 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
14 Hb_000099_240 0.1058575768 - - 60S ribosomal protein L7a, putative [Ricinus communis]
15 Hb_005993_040 0.106106135 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
16 Hb_004800_230 0.1067652533 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
17 Hb_000000_160 0.1068067824 - - PREDICTED: membrin-11 [Jatropha curcas]
18 Hb_003266_050 0.1071505412 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
19 Hb_001766_150 0.1083735936 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
20 Hb_011571_020 0.108957766 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]

Gene co-expression network

sample Hb_042083_050 Hb_042083_050 Hb_027295_010 Hb_027295_010 Hb_042083_050--Hb_027295_010 Hb_000003_160 Hb_000003_160 Hb_042083_050--Hb_000003_160 Hb_064264_010 Hb_064264_010 Hb_042083_050--Hb_064264_010 Hb_000933_180 Hb_000933_180 Hb_042083_050--Hb_000933_180 Hb_002233_150 Hb_002233_150 Hb_042083_050--Hb_002233_150 Hb_011360_140 Hb_011360_140 Hb_042083_050--Hb_011360_140 Hb_027295_010--Hb_000003_160 Hb_001358_030 Hb_001358_030 Hb_027295_010--Hb_001358_030 Hb_001369_660 Hb_001369_660 Hb_027295_010--Hb_001369_660 Hb_012389_020 Hb_012389_020 Hb_027295_010--Hb_012389_020 Hb_000099_240 Hb_000099_240 Hb_027295_010--Hb_000099_240 Hb_003615_010 Hb_003615_010 Hb_000003_160--Hb_003615_010 Hb_000640_240 Hb_000640_240 Hb_000003_160--Hb_000640_240 Hb_010691_060 Hb_010691_060 Hb_000003_160--Hb_010691_060 Hb_000041_270 Hb_000041_270 Hb_000003_160--Hb_000041_270 Hb_003058_130 Hb_003058_130 Hb_000003_160--Hb_003058_130 Hb_046049_010 Hb_046049_010 Hb_064264_010--Hb_046049_010 Hb_000101_270 Hb_000101_270 Hb_064264_010--Hb_000101_270 Hb_002868_010 Hb_002868_010 Hb_064264_010--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_064264_010--Hb_001946_210 Hb_175215_010 Hb_175215_010 Hb_064264_010--Hb_175215_010 Hb_009767_120 Hb_009767_120 Hb_000933_180--Hb_009767_120 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
427.612 176.054 244.99 122.619 289.419 523.417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
381.911 636.399 202.567 279.803 55.7552

CAGE analysis