Hb_027295_010

Information

Type -
Description -
Location Contig27295: 16063-18510
Sequence    

Annotation

kegg
ID rcu:RCOM_1198120
description 40S ribosomal protein S7, putative
nr
ID XP_002533703.1
description 40S ribosomal protein S7, putative [Ricinus communis]
swissprot
ID Q9ZNS1
description 40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1
trembl
ID B9T634
description 40S ribosomal protein S7, putative OS=Ricinus communis GN=RCOM_1198120 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28505: 16154-18509
cDNA
(Sanger)
(ID:Location)		 030_I16.ab1: 16336-18509

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027295_010 0.0 - - 40S ribosomal protein S7, putative [Ricinus communis]
2 Hb_042083_050 0.0680436454 - - 60S ribosomal protein L11, putative [Ricinus communis]
3 Hb_000003_160 0.0729986774 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
4 Hb_001358_030 0.0774310847 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
5 Hb_001369_660 0.0884508915 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
6 Hb_012389_020 0.0896473199 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
7 Hb_000099_240 0.0897943484 - - 60S ribosomal protein L7a, putative [Ricinus communis]
8 Hb_000041_270 0.0905602612 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
9 Hb_000640_240 0.0920847138 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
10 Hb_001430_120 0.0944625479 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
11 Hb_105386_010 0.0960526066 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
12 Hb_004800_230 0.0970431241 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
13 Hb_005260_020 0.0975597806 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
14 Hb_001766_150 0.0988880543 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
15 Hb_002233_150 0.0990830856 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
16 Hb_000189_340 0.0991057693 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
17 Hb_000163_160 0.0992024932 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
18 Hb_064264_010 0.0999999276 - - hypothetical protein [Zea mays]
19 Hb_000092_100 0.1020937936 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
20 Hb_096563_010 0.1022157237 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]

Gene co-expression network

sample Hb_027295_010 Hb_027295_010 Hb_042083_050 Hb_042083_050 Hb_027295_010--Hb_042083_050 Hb_000003_160 Hb_000003_160 Hb_027295_010--Hb_000003_160 Hb_001358_030 Hb_001358_030 Hb_027295_010--Hb_001358_030 Hb_001369_660 Hb_001369_660 Hb_027295_010--Hb_001369_660 Hb_012389_020 Hb_012389_020 Hb_027295_010--Hb_012389_020 Hb_000099_240 Hb_000099_240 Hb_027295_010--Hb_000099_240 Hb_042083_050--Hb_000003_160 Hb_064264_010 Hb_064264_010 Hb_042083_050--Hb_064264_010 Hb_000933_180 Hb_000933_180 Hb_042083_050--Hb_000933_180 Hb_002233_150 Hb_002233_150 Hb_042083_050--Hb_002233_150 Hb_011360_140 Hb_011360_140 Hb_042083_050--Hb_011360_140 Hb_003615_010 Hb_003615_010 Hb_000003_160--Hb_003615_010 Hb_000640_240 Hb_000640_240 Hb_000003_160--Hb_000640_240 Hb_010691_060 Hb_010691_060 Hb_000003_160--Hb_010691_060 Hb_000041_270 Hb_000041_270 Hb_000003_160--Hb_000041_270 Hb_003058_130 Hb_003058_130 Hb_000003_160--Hb_003058_130 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_004440_050 Hb_004440_050 Hb_001369_660--Hb_004440_050 Hb_000163_160 Hb_000163_160 Hb_001369_660--Hb_000163_160 Hb_168054_010 Hb_168054_010 Hb_001369_660--Hb_168054_010 Hb_010180_020 Hb_010180_020 Hb_001369_660--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_001369_660--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_001369_660--Hb_003687_110 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_004586_140 Hb_004586_140 Hb_012389_020--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_012389_020--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_012389_020--Hb_004931_070 Hb_000302_270 Hb_000302_270 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_007590_010 Hb_007590_010 Hb_000099_240--Hb_007590_010 Hb_000923_020 Hb_000923_020 Hb_000099_240--Hb_000923_020 Hb_004223_090 Hb_004223_090 Hb_000099_240--Hb_004223_090 Hb_000099_240--Hb_001358_030 Hb_003777_270 Hb_003777_270 Hb_000099_240--Hb_003777_270 Hb_001677_210 Hb_001677_210 Hb_000099_240--Hb_001677_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
165.646 101.702 108.104 84.4629 118.633 232.867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.466 232.205 93.6983 111.543 24.4673

CAGE analysis